GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002151-TA|BGIBMGA002151-PA|IPR002130|Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
         (147 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   4e-29
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   1e-26
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              111   2e-25
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)        104   3e-23
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   7e-22
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         75   2e-14
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          73   1e-13
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         69   2e-12
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   6e-12
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   1e-10
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         56   9e-09
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         49   1e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   7e-06
SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)                28   2.7  
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.3  
SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  124 bits (298), Expect = 4e-29
 Identities = 67/143 (46%), Positives = 88/143 (61%), Gaps = 5/143 (3%)

Query: 2   GKIMLEMYWKHAPLTCRNFMELV--RRGY-YNNTKFHRVIRDFMIQXXXXXXXXXXX-QS 57
           G+++L ++   AP T  NF+ L    +G+ Y ++ FHRVI++FMIQ             S
Sbjct: 40  GRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYS 99

Query: 58  IYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGM 117
           IYG +F DE   +LKH G G L MANAG NTN SQF+IT   T WLDG HT FG+V  GM
Sbjct: 100 IYGKYFDDE-NFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGM 158

Query: 118 TVVKRIGLVECDKNDCPVDDVRI 140
            VV+RI     D +D P+D+V+I
Sbjct: 159 DVVRRIENTRVDTHDKPLDEVKI 181


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  115 bits (277), Expect = 1e-26
 Identities = 64/132 (48%), Positives = 78/132 (59%), Gaps = 5/132 (3%)

Query: 2   GKIMLEMYWKHAPLTCRNFMELV--RRGY-YNNTKFHRVIRDFMIQXXXXXXXXXXX-QS 57
           G+I++E+     P T  NF  L    +G+ Y  + FHRVI  FM Q            +S
Sbjct: 17  GRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKS 76

Query: 58  IYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGM 117
           IYG  F DE   +LKH G GILSMANAGP TN SQFF+  A T WLDGKH +FG V++GM
Sbjct: 77  IYGAKFADE-NFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGM 135

Query: 118 TVVKRIGLVECD 129
            VVK+I  V  D
Sbjct: 136 DVVKKIEKVGSD 147


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  111 bits (268), Expect = 2e-25
 Identities = 59/129 (45%), Positives = 77/129 (59%), Gaps = 5/129 (3%)

Query: 2   GKIMLEMYWKHAPLTCRNFMELV--RRGY-YNNTKFHRVIRDFMIQXXXXXXXXXXX-QS 57
           G+I++E+     P+T  NF  L    +G+ Y  + FHR+I  FM Q            +S
Sbjct: 151 GRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKS 210

Query: 58  IYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGM 117
           IYG  F+DE    LKH GAG+LSMAN+GPNTN SQFF+T   T WLDGKH +FG V  G 
Sbjct: 211 IYGAKFEDE-NFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGF 269

Query: 118 TVVKRIGLV 126
            VV+++  V
Sbjct: 270 DVVRKMEAV 278


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score =  104 bits (249), Expect = 3e-23
 Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 1/86 (1%)

Query: 56  QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQN 115
           +SI+G  F+DE   +L+H     +SMANAGPNTN SQFFIT+ PT WLD KHT+FGRV  
Sbjct: 7   ESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVK 66

Query: 116 GMTVVKRIGLVECD-KNDCPVDDVRI 140
           GM V ++I LV+ + KND P +D++I
Sbjct: 67  GMDVAQQISLVKTNPKNDQPYEDIKI 92


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =   99 bits (238), Expect = 7e-22
 Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 3/97 (3%)

Query: 25  RRGY-YNNTKFHRVIRDFMIQXXXXXXXXXXX-QSIYGPHFKDEITSDLKHAGAGILSMA 82
           ++G+ Y N+ FHRVI+DFMIQ            +SIYG  F DE    L+H GAG LSMA
Sbjct: 84  QKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE-NFKLQHYGAGWLSMA 142

Query: 83  NAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTV 119
           NAG +TN SQFFIT   T WLDG+H +FG+V  GM V
Sbjct: 143 NAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 62  HFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVK 121
           H+  +     +H   G+LSMAN+GPNTN SQFFIT  PT  LDG+H +FG+V  GM VV+
Sbjct: 178 HYTTKDVLSTEHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVR 237

Query: 122 RIGLVECD----KNDCPVDD 137
            +     D    K+ C +++
Sbjct: 238 ELEATPVDDSSPKSPCIIEE 257


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 78  ILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVKRI 123
           ILSMANAGP TN SQFF+  A T WLDGKH +FG V++GM VVK++
Sbjct: 2   ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 56  QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQN 115
           +S+YGP F+DE  S + H   G++ MAN G +TN SQF+ITL P  W+D K+  FG+V  
Sbjct: 50  ESVYGPLFEDEDFS-VAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIE 108

Query: 116 GMTVV 120
           G+ V+
Sbjct: 109 GLNVL 113


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 66.9 bits (156), Expect = 6e-12
 Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 81  MANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVKRIGLVECDKNDCPVDDVRI 140
           MANAG +TN SQFFIT   T WLDGKH +FG+V  GM VV+++  V   K   PV    I
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNV-KGSTPVKTCMI 59

Query: 141 E 141
           +
Sbjct: 60  D 60


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 1   MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYG 60
           +G+I +E+    AP++  NF+  V  GYY  T+FHRVI  FM+Q           +    
Sbjct: 32  LGEIEIELDADKAPISTANFLAYVDSGYYAGTQFHRVIPGFMVQ-GGGFDADMQQKDTQA 90

Query: 61  PHFKDEITSDLKHAGAGILSMANAGPNTNA-SQFFITLAPTQWLD-GK----HTIFGRVQ 114
           P  K+E  + L H   G L+MA      +A SQFFI      +LD G     + +FG+V 
Sbjct: 91  P-IKNEADNGL-HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVV 148

Query: 115 NGMTVVKRIGLV 126
            GM VV +I  V
Sbjct: 149 KGMDVVDKIAQV 160


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 13/94 (13%)

Query: 56  QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQN 115
           +SIYG  F DE   + KH    +LSMAN GPNTN SQFFI           H +FG V  
Sbjct: 30  ESIYGGTFGDECF-EFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQ 78

Query: 116 GMTVVKRIGLVECDKNDCPVDDVRIERA--YIPK 147
           G  +V++I  +  ++ + P  DV++      IPK
Sbjct: 79  GEELVRQIESLPTNEKNRPNADVKVSNCGELIPK 112


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 1  MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIR 39
          +G I +E++ K  P  CRNF++L   GYY+NT FHR+++
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCLEGYYDNTIFHRIVK 50


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 73  HAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGR 112
           H   G +SMAN GPN+N SQFFI       LD K+T+FG+
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGK 340


>SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)
          Length = 702

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 19/99 (19%), Positives = 36/99 (36%)

Query: 17  CRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYGPHFKDEITSDLKHAGA 76
           C   +E +   +   T   ++++ F I            Q  YG     +  +  K    
Sbjct: 384 CNQVVEGIAHIFEGITSPKQLLQKFAINAGNRYISKLTKQEKYGDKLMPKGENPTKQKAF 443

Query: 77  GILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQN 115
             +S++   PN+ +  F  +L  T W +     F R +N
Sbjct: 444 DYISLSRTQPNSISLDFVFSLECTGWPEIASEYFNRDRN 482


>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2225

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 94   FITLAPTQWLDGKHTIFGRVQNGMTVVKRIGLVECDKNDCP 134
            F  L  T+ L+G H  F +   G+ +V  +GL +C   DCP
Sbjct: 1640 FKPLYLTRQLNGSHLAFEK-NVGVRIVT-VGLSQCRAQDCP 1678


>SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 113 VQNGMTVVKRIGLV-ECDKNDCPVDDVRIERAYIPK 147
           + + + V+KR+G+    +K  C V++++  R  +PK
Sbjct: 244 IHDDIEVLKRMGMAFGLEKKSCSVENLKTSRTMVPK 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,811,363
Number of Sequences: 59808
Number of extensions: 169637
Number of successful extensions: 340
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 16
length of query: 147
length of database: 16,821,457
effective HSP length: 76
effective length of query: 71
effective length of database: 12,276,049
effective search space: 871599479
effective search space used: 871599479
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)