GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002151-TA|BGIBMGA002151-PA|IPR002130|Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
         (147 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 72  KHAGAGILSMANAGPNTNASQFFITLAPTQWL 103
           +HAG  + +  NA    + S       P +W+
Sbjct: 651 RHAGEYVCTAENAAGTASHSTTLTVNVPPRWI 682


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 108 TIFGRVQNGMTVVKRIGLV 126
           T+FG V   + +V+ IG++
Sbjct: 195 TVFGSVAIAIAIVELIGII 213


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 115 NGMTVVKRIGLVECDK 130
           +G+T V RI + ECD+
Sbjct: 243 DGLTSVFRIQVDECDR 258


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,159
Number of Sequences: 429
Number of extensions: 1394
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 147
length of database: 140,377
effective HSP length: 52
effective length of query: 95
effective length of database: 118,069
effective search space: 11216555
effective search space used: 11216555
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)