Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002150-TA|BGIBMGA002150-PA|undefined
         (440 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031222-1|AAH31222.1|  429|Homo sapiens serum response factor b...    48   9e-05
AY611630-1|AAU25829.2|  429|Homo sapiens SRF-dependent transcrip...    48   9e-05
AK058015-1|BAB71631.1|  427|Homo sapiens protein ( Homo sapiens ...    48   9e-05
BC017102-1|AAH17102.1|  314|Homo sapiens SRFBP1 protein protein.       44   0.001

>BC031222-1|AAH31222.1|  429|Homo sapiens serum response factor
           binding protein 1 protein.
          Length = 429

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 11  NNELILMKKSLNQAKTHTIHKLTRXXXXXXXXXXXXXXXXXXXRKAELAVKEVLEIKKIK 70
           NNE++ M+K + + +   I KL R                   R+A+  ++E+  +K++K
Sbjct: 10  NNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRRAQRLLEEIHAMKELK 69

Query: 71  PRDVAKFAITHTGELKNYLNKP-TVDQERVCSRLLLHKSMQEKYKIIR 117
           P  V K A+      +    KP +   ER  +RL +H  +++K  +++
Sbjct: 70  PDIVTKSALGDDINFEKIFKKPDSTATERAIARLAVHPLLKKKIDVLK 117



 Score = 44.0 bits (99), Expect = 0.001
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 392 KDNDNKKTFGGKNEDVAKKEEKLHPSWEA----KKKQSGILPFQGKKIVFDE 439
           K+  NKK  G       + +  LHPSWEA    K++QS I  FQGKKI FD+
Sbjct: 378 KNQFNKKLSGRLENTKQQLQLPLHPSWEASRRRKEQQSNIAVFQGKKITFDD 429


>AY611630-1|AAU25829.2|  429|Homo sapiens SRF-dependent
           transcription regulation associated protein protein.
          Length = 429

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 11  NNELILMKKSLNQAKTHTIHKLTRXXXXXXXXXXXXXXXXXXXRKAELAVKEVLEIKKIK 70
           NNE++ M+K + + +   I KL R                   R+A+  ++E+  +K++K
Sbjct: 10  NNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRRAQRLLEEIHAMKELK 69

Query: 71  PRDVAKFAITHTGELKNYLNKP-TVDQERVCSRLLLHKSMQEKYKIIR 117
           P  V K A+      +    KP +   ER  +RL +H  +++K  +++
Sbjct: 70  PDIVTKSALGDDINFEKIFKKPDSTATERAIARLAVHPLLKKKIDVLK 117



 Score = 44.0 bits (99), Expect = 0.001
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 392 KDNDNKKTFGGKNEDVAKKEEKLHPSWEA----KKKQSGILPFQGKKIVFDE 439
           K+  NKK  G       + +  LHPSWEA    K++QS I  FQGKKI FD+
Sbjct: 378 KNQFNKKLSGRLENTKQQLQLPLHPSWEASRRRKEQQSNIAVFQGKKITFDD 429


>AK058015-1|BAB71631.1|  427|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25286 fis, clone STM06909. ).
          Length = 427

 Score = 47.6 bits (108), Expect = 9e-05
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 11  NNELILMKKSLNQAKTHTIHKLTRXXXXXXXXXXXXXXXXXXXRKAELAVKEVLEIKKIK 70
           NNE++ M+K + + +   I KL R                   R+A+  ++E+  +K++K
Sbjct: 10  NNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRRAQRLLEEIHAMKELK 69

Query: 71  PRDVAKFAITHTGELKNYLNKP-TVDQERVCSRLLLHKSMQEKYKIIR 117
           P  V K A+      +    KP +   ER  +RL +H  +++K  +++
Sbjct: 70  PDIVTKSALGDDINFEKIFKKPDSTATERAIARLAVHPLLKKKIDVLK 117



 Score = 36.7 bits (81), Expect = 0.16
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 392 KDNDNKKTFGGKNEDVAKKEEKLHPSWEA----KKKQSGILPFQGKK 434
           K+  NKK  G       + +  LHPSWEA    K++QS I  FQGKK
Sbjct: 378 KNQFNKKLSGRLENTKQQLQLPLHPSWEASRRRKEQQSNIAVFQGKK 424


>BC017102-1|AAH17102.1|  314|Homo sapiens SRFBP1 protein protein.
          Length = 314

 Score = 44.0 bits (99), Expect = 0.001
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 392 KDNDNKKTFGGKNEDVAKKEEKLHPSWEA----KKKQSGILPFQGKKIVFDE 439
           K+  NKK  G       + +  LHPSWEA    K++QS I  FQGKKI FD+
Sbjct: 263 KNQFNKKLSGRLENTKQQLQLPLHPSWEASRRRKEQQSNIAVFQGKKITFDD 314


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.311    0.129    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,994,565
Number of Sequences: 224733
Number of extensions: 1492122
Number of successful extensions: 3052
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3043
Number of HSP's gapped (non-prelim): 7
length of query: 440
length of database: 73,234,838
effective HSP length: 92
effective length of query: 348
effective length of database: 52,559,402
effective search space: 18290671896
effective search space used: 18290671896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 67 (31.1 bits)