Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002150-TA|BGIBMGA002150-PA|undefined
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa...    29   4.7  
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put...    29   6.2  
At1g19430.1 68414.m02421 dehydration-responsive protein-related ...    29   6.2  
At3g25430.1 68416.m03162 CAF1 family ribonuclease contains Pfam ...    29   8.1  

>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
           family protein contains zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 622

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 217 SELENEVDDSEQINIKSLESKELPTHKIK-DYNNISD 252
           SE E EV +S  I+ +  E  E PT KIK D N++ D
Sbjct: 581 SEEEAEVAESSNISEEEEEESEPPTKKIKMDNNSVGD 617


>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1503

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 164 DIEEINTSNEHIVTENGNSDLSNEHDIINGSNKPSDXXXXXXXXXXXKHDNAASELENEV 223
           D+E+I    E  + ENG+ D+  +    +G ++              K D   SEL  +V
Sbjct: 146 DVEDIKDDGESKI-ENGSVDVDVKQASTDGESESKVKDVEEEDVGTKKDDEGESELGGKV 204

Query: 224 D-DSEQINIKSLESKEL 239
           D D +  N+   E  EL
Sbjct: 205 DVDDKSDNVIEEEGVEL 221


>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
           similarity to early-responsive to dehydration stress
           ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 724

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 15/70 (21%), Positives = 29/70 (41%)

Query: 168 INTSNEHIVTENGNSDLSNEHDIINGSNKPSDXXXXXXXXXXXKHDNAASELENEVDDSE 227
           +    EH   E+ +SD SN+ D   G+    +             D++AS  E   + +E
Sbjct: 136 VKEDQEHEEAESDDSDQSNKEDGEEGTESDGNEGESDGNGDGSVDDSSASVDEEVEEKNE 195

Query: 228 QINIKSLESK 237
           ++ +  +  K
Sbjct: 196 EVTVNEISKK 205


>At3g25430.1 68416.m03162 CAF1 family ribonuclease contains Pfam
           domain, PF04857: CAF1 family ribonuclease
          Length = 618

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 154 NRKTSNSGDWDIEEINTSNEHIVTE 178
           N KT N G W ++++  SN H+  +
Sbjct: 15  NTKTLNQGRWSVKQVKKSNFHVTLD 39


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.129    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,308,103
Number of Sequences: 28952
Number of extensions: 297420
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 5
length of query: 440
length of database: 12,070,560
effective HSP length: 83
effective length of query: 357
effective length of database: 9,667,544
effective search space: 3451313208
effective search space used: 3451313208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)