GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002150-TA|BGIBMGA002150-PA|undefined
         (440 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   3.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   9.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 155 RKTSNSGDWDIEEINTSNEHIVTENGNSDLSNEHDIINGSN 195
           +++S+   W   + +TSN      NGN+  SN H   N  N
Sbjct: 356 KRSSDEQQWRNNQPSTSNNRWHNNNGNN--SNNHWRKNNPN 394


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 394  NDNKKTFGGKNEDVAKKEEKLHPSWEAKKKQSGILPFQGKKIVF 437
            N N++TF   NE +   E+ LHP  + KKK S  L     K+VF
Sbjct: 1189 NRNEETFW--NELI---EQYLHPIEDDKKKVSAELKDLRDKMVF 1227


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 394  NDNKKTFGGKNEDVAKKEEKLHPSWEAKKKQSGILPFQGKKIVF 437
            N N++TF   NE +   E+ LHP  + KKK S  L     K+VF
Sbjct: 1189 NRNEETFW--NELI---EQYLHPIEDDKKKVSAELKDLRDKMVF 1227


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 164 DIEEINTSNEHIVTENGNSDLS 185
           D+   NT N H+V  NG+  +S
Sbjct: 505 DLFAPNTYNRHLVAPNGDHVIS 526


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.129    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,598
Number of Sequences: 317
Number of extensions: 2587
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 440
length of database: 114,650
effective HSP length: 59
effective length of query: 381
effective length of database: 95,947
effective search space: 36555807
effective search space used: 36555807
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)