GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002150-TA|BGIBMGA002150-PA|undefined
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    45   2e-05
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   3.0  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   3.0  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   3.9  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   6.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   9.1  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%), Gaps = 2/32 (6%)

Query: 409 KKEEKLHPSWEAKKKQS--GILPFQGKKIVFD 438
           +K E+LHPSWEAK+KQ       FQGKKIVFD
Sbjct: 357 QKPEQLHPSWEAKRKQKMPSSAAFQGKKIVFD 388


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 299 KIVDPFFITSTGENYMSVAEPRQPDEFKEI 328
           K+ D +F++ + E +  +     PDEF+EI
Sbjct: 50  KVKDEYFVSESDEKFHPICIDNIPDEFEEI 79


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 154 NRKTSNSGDWDIEEINTSNEHIVT-ENGNSDLSNEHDIINGSNKPSDXXXXXXXXXXXKH 212
           N  TS+        I++S+ ++   E   S L+  + +++ S    +           KH
Sbjct: 206 NSSTSSLSQGAQTGIDSSSNYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATKH 265

Query: 213 DNAASELE---NEVDDSEQINIKSLESKELPTHKIKDYNN 249
            N   +LE   +E     +I+IK L   E   ++IK+  N
Sbjct: 266 KNEIFQLEEKLHEASHEAEISIKKLNDAE---NRIKELEN 302


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 159 NSGDWDIEEINTSNEHIVTENGNSDLSNEHDIINGSNKPSDXXXXXXXXXXXKHDNAASE 218
           N  D + E  ++ ++H   EN +S L N  + I   N+                DN    
Sbjct: 200 NESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAESVLSSDDN---- 255

Query: 219 LENEVDDSEQINIKSLESKELPTHKIKDYNNI 250
                D  E+I+IK ++     T+K  +YN I
Sbjct: 256 -----DSIEEISIKKVKYDPHETNKESEYNLI 282


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 20/87 (22%), Positives = 30/87 (34%)

Query: 159 NSGDWDIEEINTSNEHIVTENGNSDLSNEHDIINGSNKPSDXXXXXXXXXXXKHDNAASE 218
           NS     + +  SN ++    G S + N   +  G N                H    + 
Sbjct: 140 NSSLKSFQSVPDSNVNVFGGFGGSVVDNNELLSTGKNSHQTTSLNLEGSPINLHAYKGTV 199

Query: 219 LENEVDDSEQINIKSLESKELPTHKIK 245
                DDS  IN K+L  + +  HK K
Sbjct: 200 TSIINDDSRNINKKTLSKQPVSEHKEK 226


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 372 DFSTKSSGRFDNSKPSNFNYKDNDNKKTFGGKNEDVAKKEEKLHPSWEAKKKQSG 426
           D S KSS   D  + +  N+K  + ++    K E++  K EKL    E +++  G
Sbjct: 41  DASVKSS-YVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNERRRRTQG 94


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,420
Number of Sequences: 5004
Number of extensions: 60218
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 7
length of query: 440
length of database: 2,362,478
effective HSP length: 75
effective length of query: 365
effective length of database: 1,987,178
effective search space: 725319970
effective search space used: 725319970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)