GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002150-TA|BGIBMGA002150-PA|undefined
         (440 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    38   0.011
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    38   0.011
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    29   6.5  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    29   8.6  

>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 38.3 bits (85), Expect = 0.011
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 2   EVGAVKQAFNNELILMKKSLNQAKTHTIHKLTRXXXXXXXXXXXXXXXXXXX---RKAEL 58
           ++    +  NNEL+ ++ +   AK   + ++ R                      RK   
Sbjct: 103 QIPLTAEKLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEERDRKIAR 162

Query: 59  AVKEVLEIKKIKPRDVAKFAITHTGELKNY-LNKPTVDQERVCSRLLLHKSMQEKYKIIR 117
            V+E+L +K      VAKFA  +T  L    +N  T   ER+  +L+    + EK + IR
Sbjct: 163 LVEEILGLKTFDKDSVAKFAALNTKSLAELKINGKTEVAERLMYKLVCQSIIVEKIQSIR 222

Query: 118 RRF 120
            ++
Sbjct: 223 EKY 225


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 38.3 bits (85), Expect = 0.011
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 2   EVGAVKQAFNNELILMKKSLNQAKTHTIHKLTRXXXXXXXXXXXXXXXXXXX---RKAEL 58
           ++    +  NNEL+ ++ +   AK   + ++ R                      RK   
Sbjct: 103 QIPLTAEKLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEERDRKIAR 162

Query: 59  AVKEVLEIKKIKPRDVAKFAITHTGELKNY-LNKPTVDQERVCSRLLLHKSMQEKYKIIR 117
            V+E+L +K      VAKFA  +T  L    +N  T   ER+  +L+    + EK + IR
Sbjct: 163 LVEEILGLKTFDKDSVAKFAALNTKSLAELKINGKTEVAERLMYKLVCQSIIVEKIQSIR 222

Query: 118 RRF 120
            ++
Sbjct: 223 EKY 225


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 376 KSSGRFDNSKPSNFNYKDNDNKKTFGGKNEDVAKKEEK 413
           +SSGR  + K S+ + +D D+ +    + +DV KKE +
Sbjct: 569 RSSGRSKDIKASSSHRRDRDDARRKDRRRDDVRKKERR 606


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 192 NGSNKPSDXXXXXXXXXXXKHDNAASELENEVDDSEQINIKSLESKELPTHKIKDYNNIS 251
           + S+KPS                 + E  ++ DDS+    K  E K  P  + ++ NN S
Sbjct: 628 SSSSKPSSSKTSKKSSGPSSSKAISKEYISDSDDSDDEEPKKKEKKAAPKEESEESNNGS 687

Query: 252 D 252
           D
Sbjct: 688 D 688


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.129    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,776,278
Number of Sequences: 27539
Number of extensions: 317947
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 8
length of query: 440
length of database: 12,573,161
effective HSP length: 84
effective length of query: 356
effective length of database: 10,259,885
effective search space: 3652519060
effective search space used: 3652519060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)