GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002149-TA|BGIBMGA002149-PA|IPR000073|Alpha/beta
hydrolase fold-1, IPR004147|ABC-1
         (1091 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    27   1.1  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    27   1.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   1.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   7.7  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 893 TLLAQYPEYFVPDVI---DELCAQEVITTEL 920
           T++A+Y EY +PD++   DEL   E I T +
Sbjct: 24  TVVAKYMEYLMPDIMPCADELHISEDIATNI 54


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 893 TLLAQYPEYFVPDVI---DELCAQEVITTEL 920
           T++A+Y EY +PD++   DEL   E I T +
Sbjct: 24  TVVAKYMEYLMPDIMPCADELHISEDIATNI 54


>AY739659-1|AAU85298.1|  288|Apis mellifera
            hyperpolarization-activated ion channelvariant T protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 977  ILLDFGATREYSKEFM----DQYIEIIKAASLGDRAAILRMSREMKFLTGYESKVILLDF 1032
            I L F   +++S+ F      + + I++ A L     +LR+SR +++++ +E   I L  
Sbjct: 182  IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQ 241

Query: 1033 GATREYSK 1040
               R Y +
Sbjct: 242  QPERHYER 249


>AY739658-1|AAU85297.1|  664|Apis mellifera
            hyperpolarization-activated ion channelvariant L protein.
          Length = 664

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 977  ILLDFGATREYSKEFM----DQYIEIIKAASLGDRAAILRMSREMKFLTGYESKVIL 1029
            I L F   +++S+ F      + + I++ A L     +LR+SR +++++ +E   IL
Sbjct: 182  IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIL 238



 Score = 25.0 bits (52), Expect = 3.3
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 1028 ILLDFGATREYSKEFM----DQYIEIIKAASLGDRAAILRMSREMKFLTGYESKETLRRL 1083
            I L F   +++S+ F      + + I++ A L     +LR+SR +++++ +E    L+ L
Sbjct: 182  IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYILQNL 241


>AY280848-1|AAQ16312.1|  632|Apis mellifera
            hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 1028 ILLDFGATREYSKEFM----DQYIEIIKAASLGDRAAILRMSREMKFLTGYESKETLRRL 1083
            I L F   +++S+ F      + + I++ A L     +LR+SR +++++ +E    L   
Sbjct: 182  IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNMA 241

Query: 1084 SAML 1087
            S  +
Sbjct: 242  SVFM 245



 Score = 23.8 bits (49), Expect = 7.7
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 977  ILLDFGATREYSKEFM----DQYIEIIKAASLGDRAAILRMSREMKFLTGYESKVIL 1029
            I L F   +++S+ F      + + I++ A L     +LR+SR +++++ +E    L
Sbjct: 182  IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFL 238


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 628 EKDEVKTEIPKFESVKPKFETL 649
           + D   T+I   +SVK KFETL
Sbjct: 315 DPDHHSTDIQNCDSVKIKFETL 336


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,909
Number of Sequences: 429
Number of extensions: 13114
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 1091
length of database: 140,377
effective HSP length: 65
effective length of query: 1026
effective length of database: 112,492
effective search space: 115416792
effective search space used: 115416792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)