Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002148-TA|BGIBMGA002148-PA|IPR003593|AAA ATPase,
IPR013602|Dynein heavy chain, N-terminal region 2, IPR011704|ATPase
associated with various cellular activities, AAA-5, IPR004273|Dynein
heavy chain
(3112 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 354 1e-97
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 36 0.069
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.37
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 33 0.48
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 1.1
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 32 1.1
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 32 1.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 32 1.1
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 31 3.4
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 4.5
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 30 6.0
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 30 6.0
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 30 6.0
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 29 7.9
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 29 7.9
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 29 7.9
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 354 bits (870), Expect = 1e-97
Identities = 245/881 (27%), Positives = 412/881 (46%), Gaps = 43/881 (4%)
Query: 3 EKDIEAKLRQVTNEWSVHELTFQTFNNRGELLLRGDTTAETIGQLEDSLMILGSLLSNRY 62
E ++E + +V + W +F++F R +++ E I +E ++ L + ++R+
Sbjct: 1454 EANLENQFNEVHSFWKNSYFSFKSFKGRNYIVVG---CQELIDAVEKNMDSLNLIKTSRH 1510
Query: 63 NAPFRKQIQQWLYDLQSTNEILERWLLVQNMWVYLEAVFVGGDIAKQL-PKEAKRFSKID 121
I ++ + L W +Q +W +L A+F +QL P+ A F
Sbjct: 1511 FKDGDMNITDLQSKMKIIVKFLNIWKEIQQIWTHLSAIFYESTYIQQLLPELAASFFNSS 1570
Query: 122 KSWQKIMQRAHETPGVVSCCVGDDXXXXXXXXXXXXXXXXXKSLSGYLERKRTMFPRFFF 181
K++ ++ E + KSL Y E +R R +F
Sbjct: 1571 KTYMHLVTLLKERSYLYKVS-NIPSLLESAAKLSTTLEDSKKSLLKYFELQRHKISRLYF 1629
Query: 182 VSDPALLEILGQASDSHTIQNHLLSIFDNIRYVKFHDIEYNKMIAIISSEGEEIKLERPV 241
+ D L+E++ D I ++ ++ IR + D E + ++EG E+ + P+
Sbjct: 1630 LGDDDLMELISNPCDPFVINKQIIKLYPGIRSL-IVDTENTNINGCTTNEGNELLFDNPI 1688
Query: 242 RAEGSVET--WXXXXXXXXXXXXXXIIRNAVSLINDPAFNLL--LFLD----KMPAQIGL 293
+ + W + + I D +N +F + P+QI L
Sbjct: 1689 CLLDNTQPLHWISSLEPFLKATLFQLFSTSFQQIRDFYYNKSRNVFCKEWFLRYPSQITL 1748
Query: 294 LGIQIIWTRDAEAALMQARQDKKIMSDTNNKFLELLNTLIDQTTRDLLKIERIKFETLIT 353
L ++ + E + D + + N+ L+ L D+ + K + F L+
Sbjct: 1749 LSLRCTLCHEIETGIADCCLDA-VFNFINDGISSLV-LLADENELSIKKKVTLMFNELL- 1805
Query: 354 IHVHQRDIFDMLCRLNVRSANDFEWLKQCRFYFKEDTDK--TWISVTDVTFTYQNEYLGC 411
H ++ +LC+ S N++ W ++ + +++ED D I + + F Y EY
Sbjct: 1806 ---HFKETVGLLCK---NSFNNYFWSREVKAFYREDHDDEAVVIKMFSLEFIYAFEYSEL 1859
Query: 412 TERLVITPLTDRCYITLAQALAMSMGGAPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQ 471
+ +V T LT C+ L ++A ++GG+P GPAGTGKTETVK + L K V VFNC +
Sbjct: 1860 DDPIVYTDLTRNCFSVLLHSIASNLGGSPIGPAGTGKTETVKAVSAYLGKNVFVFNCDNA 1919
Query: 472 MDYRGLGRIYKGLAQSGSWGCFDEFNRIE---LPXXXXXXXXXXXXXXXXXXXXXXFIFT 528
+Y+ + RI GLAQ G++ CFDEFNR++ L I
Sbjct: 1920 FNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSDGLCQSPILL 1979
Query: 529 DGDTSDMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLE 588
D T IF+TMNPGY GR +LP NLK FR + M PD + I + S GF E
Sbjct: 1980 DAPT--------IFVTMNPGYLGRFKLPSNLKKLFRPIWMGSPDNKKICEILFLSFGFKE 2031
Query: 589 NITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVL----RTLGAVKRVNSKDNESTIVM 644
+ L++ + + C L+ +HYDFGLR + V+ R G +K+ N+ E I+
Sbjct: 2032 SSLLSQVLDSFFLCCSGSLSNCLHYDFGLRAMKVVIKAAKRIKGFLKKKNTICQELEILW 2091
Query: 645 RVLRDMNLSKLIDEDEPLFISLVADLFPNQMLEKTTYIE---LEEAIKKQVDLSGLINHP 701
+R++ LI +D PLF F ++ +I+ E I++ + + N+
Sbjct: 2092 YAIREVLYPSLIYQDIPLFFKAEESYFNFPAVKANAFIDPDNFEVNIEQTLSKNFFGNNQ 2151
Query: 702 PWILKIIQLYETQRVRHGIMTLGPPGAGKTTCIHTLMSALSEIENPHREMRMNPKAITAA 761
LKI+QLY+ +GI+ LG G+GK+ L SAL I ++PKA+T
Sbjct: 2152 YLKLKIMQLYQMSEAYNGIILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISPKALTKE 2211
Query: 762 QMFGRLDVATNDWTDGIFSALWRKTLKIKTGENIWLVLDGPVDSIWIENLNSVLDDNKTL 821
+FG +++ T +WTDG+F+ L RKT + V D + W+E +NS+LDDNKTL
Sbjct: 2212 SLFGSMNMDTREWTDGVFTKLLRKTRDSCYYKRYMFVFDDELSPEWVEAMNSLLDDNKTL 2271
Query: 822 TLANGDRLTMSPTSKVLFEPENIDNASPATVSRNGMVYMSS 862
TL+NG+R+ + P K+ FE +++ + + AT+SR G++ +S+
Sbjct: 2272 TLSNGERIALQPYVKIFFEADSVASLTRATISRCGLICISN 2312
Score = 284 bits (696), Expect = 2e-76
Identities = 295/1357 (21%), Positives = 594/1357 (43%), Gaps = 88/1357 (6%)
Query: 967 HLHKIYVFVLIWGFGSLFETNDRIKFDGYLKSNFREILELPKHPNNKPFVVFDFYVKQPG 1026
+L K ++L W + R +F +L N ++LP+ + + + DF V
Sbjct: 2413 YLKKKICYILAWCCTGDTDAKSRERFTHWLMQNAS--VDLPEIKDFEHVSILDFDVSL-- 2468
Query: 1027 KWELWDDLVMNYQYPDTATPDYSTILVPIVDNVRINYLIHCIAKQGKAVLLLGEQGSAKT 1086
+ + W + +A ++P +D VR ++ + + V+ G GS K+
Sbjct: 2469 ETQSWYPIA-GKTLKSSALKYAGNTVIPTLDTVRYAEFLNFSLTKNRCVIFCGPPGSGKS 2527
Query: 1087 VMMKAYMKNANPEQFMGRSFNFS-SATSPYQFQKTIESYVEKRSGMTFG-PPGGKKMLV- 1143
++M +++ + + +F+ S S+ S F + Y + +GMT P +K+LV
Sbjct: 2528 MLMLGTLRSRQDVEVIALNFSISTSSKSVVSFLEQSTVYY-RSTGMTIMCPKNHEKVLVL 2586
Query: 1144 FIDDINLPQINEWGDQITNEIVRQTMSMGGFYS-LEKPGDFTTIVDIQFLGAMGQPGG-G 1201
F D+INLP+ + +R + GF+ L K ++ TI +I GA G
Sbjct: 2587 FCDEINLPRSRNCLAEDVICFLRHMLEHQGFWHPLHK--EWVTIKNIFVCGACNPSTDIG 2644
Query: 1202 RNDIPSRLKRQFAIFNCPLPNNESIDKIFKVIGEGHYNAKRGFAMEVRSLIKKIIPLTRE 1261
RND P R R+ + P + S+ I+ + E K + +++I I+ + +
Sbjct: 2645 RNDFPERFLRRTVLIFVDYPESYSLVTIYNALLE-----KSALINQYKTIILNIVKASVK 2699
Query: 1262 LWMRTRQNLLPTPAKFHYVFSLRDLSRVWQGMVGTLPTVIESEKC-LMLLWKHECSRVFS 1320
+ R+N + YV++ RDL+R + E+ L+ +W HE RV
Sbjct: 2700 FYQVLRENFKSSTQG--YVYTPRDLTRWLISFKNYAESYAETNNLSLIKVWYHEACRVLL 2757
Query: 1321 DRFTHQSDKDWFNKALYGVAEEILG-MEYRKMMEREPVFVDFMRDAPEPTGEEGEDADME 1379
DR Q + W L V G E + E++ +F D +++ E
Sbjct: 2758 DRLVSQKECSWGMTELQKVIVTDFGEFEVSVIFEKQIIFTDILKNGLE------------ 2805
Query: 1380 LPKVYEPVFDYNELRERLEMFLSQFNEMVRGSGMDLVFFPDAMFHLVKISRVIRHPRGNV 1439
D+ LR +LE +F + LVF + + H+++ R++ + +
Sbjct: 2806 -------FLDFASLRPKLESLYKKFYSSHPNN--TLVFVDETITHILRFHRILNNSGMHA 2856
Query: 1440 MLVGVGGSGKQSLTKLSTFIAGYRSFQIALTRSYNVGNFLEDLKLLYRSCGVQGKGTTFI 1499
+L G G G++++ + ++ + F++ ++Y++ +F ++LK + G
Sbjct: 2857 LLQGSVGLGQKAVVEFVCWLNSFSLFELQKNQTYSIEDFEDNLKSILILAGTTNCKACLA 2916
Query: 1500 FTDLDIKEEGFLEYLNNILSSGVISNLFTKDEQQEIISELTPIMKRENQKRSLTNELVME 1559
+ GFL+ LNN+L++ +SN F +++ EI L + + + K + E V E
Sbjct: 2917 INESIAGVPGFLDLLNNLLTNSEVSNFFDQNDWAEIKKNLNKLNEFQPLKFD-SEESVTE 2975
Query: 1560 YFLNRTCQNLHVVL-CFSPVSEAFRYRALRFPALISGCTIDWFQPWPKDALVSVADHFLA 1618
F+N QNL VV ++ F+ +L PAL++ CTID++ W +++ +A+ L
Sbjct: 2976 IFMNNVFQNLCVVFYVYTSADVDFQTNSLS-PALLNRCTIDYYHSWDYHSMLQIANEVLQ 3034
Query: 1619 E-FEIECTKEVKKELVTVLG-TIQDVVSNVSVE-------YFQRFRRSSHVTPKSYLSFI 1669
E + L + G +I D V+ V F+ ++S+ + ++ F+
Sbjct: 3035 ETISLNALDHDNPNLKNIKGSSIYDAVAQAVVNTHTSIVWEFKHLGKTSYFSCLHFIRFL 3094
Query: 1670 GGYKTIYQMKQKELGDGALRMDTGLEKLREASISVEVLKKDLAVMEQDLALASEKA-DRV 1728
+ I+ +L R++ G +K++E S ++ K+ L+ + L ++ A DR+
Sbjct: 3095 NTFCLIFGRDANKLSKEKSRIENGFKKIKETSQGIDKFKEALSDQQNVLFSKTKTANDRL 3154
Query: 1729 LTEV-TERAMQAEIVKN-QVQIVKEKAEALVAYIXXXXXXXXXXXXXXXXXXXXXXXXXN 1786
+ T++A++A+ V + Q + +K L + +
Sbjct: 3155 QCIIQTKQAVEAKKVYSLQAEASLQKKSFL---LNEKKNSVMKEVSYAKPAVIEARKSVS 3211
Query: 1787 TIKPAHIATVRKLGRPPHLIMRIMDCVLILFQRRLHPVISDTAAPCPKPSWAESLKMMAS 1846
IK AH+ +R L RPP I M+ V L S T W +++
Sbjct: 3212 DIKKAHLIELRSLSRPPMAIRITMEVVCKLLG------FSAT-------DWKNVQQLLKR 3258
Query: 1847 TTFLLQLQNY--PKDIINNEMVEHLVPYFEMEDYNMDTAKRVCGDVAGLLSWTKAMAFFH 1904
F+ ++ NY K++ N + YF + D+ R LL W K++ +
Sbjct: 3259 DDFIPKILNYNLEKELSINLRRKIEQDYFSNPIFTFDSVNRASKACGPLLLWIKSICNYS 3318
Query: 1905 SVNKEVLPLKA---NLMLQEARLKVAMDDLASAERQLEEREMSLRKVKEQYESAVSEKQQ 1961
V +++ PL + L L++ + + + +A + L+E+ L +++E+Y S +SE
Sbjct: 3319 KVLEKLEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEK---LLQLQEEYASMISEIHS 3375
Query: 1962 LTDAANVCLRKMTAATALINGLGGEKIRWTQQSKDFKEQLGRLVGDVVLATGFLSYCGPY 2021
+ + KM + +I L E+ W+ + +++ LVG+ ++ F+ Y G
Sbjct: 3376 MELQMDEVKCKMQRSIEVITDLSIERNEWSGFLNLYPKRMWNLVGESLMEASFVVYAGNL 3435
Query: 2022 NQEFRNSLLNTWMGILKSKQIPVTHDLNITNMLVENATISEWTLQGLPN-DDLSVQNALI 2080
+ R L N I+ S P++ TN +E + + N D S++N I
Sbjct: 3436 DPSMRIFLRNKCEPIISSFGFPISKSAVRTN--IERCVQTSIESKYYKNLTDYSLENIYI 3493
Query: 2081 VTKSSSYPLLVDPQSQGKNWIKNKEGSNELQITSLNHKYFRTHLEDSLSLGRPLLIEDVG 2140
+ ++ S L++DP SQ + + + + S ++K F+ ++ +L G ++I+D
Sbjct: 3494 IQENKSPLLIIDPSSQILDILPSLYKGKASDLISFSNKSFQNQIKLALLSGSAIIIKDAE 3553
Query: 2141 VELDPVIDNVLEKNFIK-SGSIEKVIVGDKECDVMPGFMLYITTKLPNPAYSPEISAKTS 2199
+ D I+ +L+ F SG ++ D +P +++ + N + + S +
Sbjct: 3554 L-WDVSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNIIFFSEVQSNELEN-KASKFMN 3611
Query: 2200 IIDFTVTMQGLEDQLLGRVILMEKSDLEEERVALFESVMKNQRSMKELESNLLCRLTSSE 2259
+++FT+++ LE Q+L VI +++ + +++ F + +R ++ L+ LL L SS
Sbjct: 3612 VVNFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSIERQIRSLQEQLLKTLCSSN 3671
Query: 2260 GSLVDDEALIQVLQITKTTAEEVNEKLKVAEVTEKKI 2296
++V + ++ +L+ K E + ++ +K+
Sbjct: 3672 ENIVGTDEIVVLLKNLKEKHETIRLAYSESQSINRKV 3708
Score = 66.5 bits (155), Expect = 6e-11
Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 17/264 (6%)
Query: 2524 EESEPRTPLICILSIGSDPSTQIASLAKSKEIILKAVSMGQGQ-EIVARKMISDSMNEGG 2582
+ESE R P I L + + + + + I VS+G + E +A + + E
Sbjct: 3899 DESESRMPTIVYLMENCEIDSLLQNAKIPQNIKKLTVSLGSAENESLADSYLKLASTEPL 3958
Query: 2583 WVLLQNIHLSLPFCVEAMDALIETEHIQESFRLWLTTEVHTEFPIGLLQMAIKFTNEPPQ 2642
W+ + NIHLS P+ + + + H+ ++ R+ +E+H + P LL ++
Sbjct: 3959 WLFINNIHLSTPWAEKLPSKM--SNHLHKNSRIVCLSEIHNQLPHQLLCISRSIVFNK-- 4014
Query: 2643 GIRASMKRTYQNITQ--DTLDYSSLSQWPPLLYAVAFLHTIVQERRKFGPLGWNIPYEFN 2700
+ S K N+ + T+ ++ L + +++LH + E F W P F+
Sbjct: 4015 --QTSFKNNLLNLLELLPTMTHTLPHNRFRLFFFLSWLHATLAEIYCFTCSSWKEPCYFD 4072
Query: 2701 QADYAASVQFIQNHLDEIDPKKGISWPTICYMLGEVQYGGRVTDDFD--------KRLLT 2752
+D+ + + N L + SW T +L V YG +V+ D KRL+
Sbjct: 4073 DSDFYFGTKILCNILYRNVHLEEFSWGTFKDLLLNVVYGPKVSASSDFIALDKILKRLIA 4132
Query: 2753 TFTNVWFCDVLLRPGFEFYKGYKV 2776
F ++LL F+F Y++
Sbjct: 4133 QFKTQISSNILLTDNFKFILPYEI 4156
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 36.3 bits (80), Expect = 0.069
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 1906 VNKEVLPLKANLMLQEARLKVAMDDLASAERQLEEREMSLRKVKEQYESAVSEKQQLTDA 1965
+ EV L+ L Q++ ++L + ++QL E SLR+++E+Y+S VSE Q + +
Sbjct: 298 LQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSELQVVKEN 357
Query: 1966 AN 1967
N
Sbjct: 358 KN 359
Score = 31.9 bits (69), Expect = 1.5
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 2235 ESVMKNQRSMKELESNLLCRLTSSEGSLVDDEALIQVLQITKTT-AEEVNEKLKVAEVTE 2293
E M+N+ + LE NL E S D I L+ +K T + + N ++ A+V E
Sbjct: 1633 ELEMRNKLKLSMLEKNLARVRAELEQSKKKDSPAILSLEASKNTDSNKSNSEVPAAQVKE 1692
Query: 2294 KKII 2297
KK+I
Sbjct: 1693 KKLI 1696
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.9 bits (74), Expect = 0.37
Identities = 49/281 (17%), Positives = 112/281 (39%), Gaps = 14/281 (4%)
Query: 1905 SVNKEVLPLKANLMLQEARLKVAMDDLASAERQLEEREMSLRKVKEQYESAVSEKQQLTD 1964
++ ++ L + L +L L +ER +E + S + ++EQ S E Q ++
Sbjct: 706 NIQLQLTSLTSERSLALEKLNDLEKSLVLSERSKDELDESYKSLQEQLASKKIEVQNVSS 765
Query: 1965 AANVCLRKMTAATALINGLGGEKIRWTQQSKDFKEQLGRLVGDVVLATGFLSYCGPYNQE 2024
++C ++ + +++ L E + T K L L + + ++ E
Sbjct: 766 QLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKADLSNLESK-LSSLQQDNFHMKAQIE 824
Query: 2025 FRNSLLNTWMGILKSKQIPVTHDLNITNMLVENAT--ISEWTLQGLPNDDLSVQNALIVT 2082
N + + S+ + +++DL + N + + + TLQ + DL L++
Sbjct: 825 SSNQEYTATVDSMNSRILELSNDLRVANSKLSECSDDVRRLTLQN--SFDLREHQTLVLQ 882
Query: 2083 KSSSYPLL---VDPQSQGKNW--IKNKEGSNELQITSLNHKYFRTHL----EDSLSLGRP 2133
S+ L + Q +N I+ E L+ + ++ L +D+
Sbjct: 883 LQSNITELKQDITLQRTVRNQLEIQTTELKERLKFMEERQENLQSKLIAANKDTTQNPDN 942
Query: 2134 LLIEDVGVELDPVIDNVLEKNFIKSGSIEKVIVGDKECDVM 2174
+ +E + +EL+ + + KS +K + +K ++M
Sbjct: 943 VEVEAISIELERTKEKLRMAELEKSNIQQKYLASEKTLEMM 983
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 33.5 bits (73), Expect = 0.48
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 2812 QINSAKDILDTILNVQPKEGGSQGGET-RESIVYRLAEDMLEKLPKQYVSF 2861
++ A++ LD + N ++GG E RE + RL ED+LEK + Y+ +
Sbjct: 71 RLRLAREYLDEVKNELVEDGGFDAKEVDRELLASRLKEDVLEKKGQMYLDY 121
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 32.3 bits (70), Expect = 1.1
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 720 IMTLGPPGAGKTTCIHTLMSALSEIENPHREMRMNPKAITAAQMFGRLDVATNDWTDGIF 779
I+ GP +GKT+ I + + H+ +R+N T Q + V TD
Sbjct: 897 ILIQGPTSSGKTSMIEYVAK-----KTGHKFVRINNHEHTDLQEYIGTYV-----TDDNG 946
Query: 780 SALWRKTLKIKTGEN-IWLVLD----GPVDSIWIENLNSVLDDNKTLTLANGDRLTMSPT 834
S +R+ + ++ N W+VLD P D + E LN +LDDN+ L + L
Sbjct: 947 SLSFREGVLVEALRNGYWIVLDELNLAPTDVL--EALNRLLDDNRELFIPETQVLVKPHP 1004
Query: 835 SKVLFEPEN 843
+LF +N
Sbjct: 1005 EFMLFATQN 1013
Score = 30.3 bits (65), Expect = 4.5
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 720 IMTLGPPGAGKTTCIHTLMSALSEIENPHREMRMNPKAIT-AAQMFGRLDVATNDWTDGI 778
I+ G PG GKT +L++AL+ E H+ +R+N T +FG DV G
Sbjct: 1562 ILLEGSPGVGKT----SLITALAR-ETGHQLVRINLSDQTDLMDLFGS-DVPVEGGEGGQ 1615
Query: 779 FSALWRKTLKIKTGEN-IWLVLD--GPVDSIWIENLNSVLDDNKTLTLANGDRLTMSPTS 835
F+ WR + N W++LD +E LN+ LD + D++ + +
Sbjct: 1616 FA--WRDAPFLAAMRNGHWVLLDELNLASQSVLEGLNACLDHRNEAYIPELDKVFKAHPN 1673
Query: 836 KVLFEPEN 843
+F +N
Sbjct: 1674 FRVFAAQN 1681
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 32.3 bits (70), Expect = 1.1
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 682 IELEEAIKKQV--DLSGLINHPPWILKIIQLYETQRV--RHGIMTLGPPGAGKTTCIHTL 737
+ LE +KK + D+ + + W Y+T+ + R G + GPPG+GKT+ ++ L
Sbjct: 210 VVLESNVKKMITDDVHDFLRNSQW-------YDTRGIPYRRGYLLYGPPGSGKTSFLYAL 262
Query: 738 MSAL 741
L
Sbjct: 263 AGEL 266
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 32.3 bits (70), Expect = 1.1
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 2051 TNMLVENATISEWTLQ-GLPNDDLSVQNALIVTKSSSYPLLVDPQSQGKNWIKNKEGSNE 2109
TN+ + +W L+ G+P L ++ L +K + + DP + +++ N
Sbjct: 1341 TNISYNYHVLKDWCLESGVPEAYLQLEELLQTSKILQF-VKDDPNYVAR--VRDFYALNF 1397
Query: 2110 LQITSLNHKY----FRTHL-EDSLS-LGRPLLIEDVGVELD---PVIDNVLEKNFIKSGS 2160
LQI +L H+Y + H+ + ++S L + ++ E + V+D L+ +F +S S
Sbjct: 1398 LQIKTLLHRYDYADYEAHVPKKTMSELSKNIVAEGINQREQLTYEVLDYRLQDSFEESPS 1457
Query: 2161 IEKVIVGDKECDV 2173
+EK+ + D +C+V
Sbjct: 1458 LEKIKIPD-DCNV 1469
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 32.3 bits (70), Expect = 1.1
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 2423 RWILDITWLNLVEISKLKTFSDVLSKISTNEKEWRVWYEKAKPEEEIIPSGYNDSLDVFR 2482
+W+ T + L++ + TF D+ +++T E +R E K +EI + D +
Sbjct: 438 KWLRRYTQVELLDYQESSTFKDIAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSE 497
Query: 2483 KLLLIRS 2489
L +I S
Sbjct: 498 VLEVISS 504
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 30.7 bits (66), Expect = 3.4
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 720 IMTLGPPGAGKTTCIHTLMSA 740
+M +GP G+GK+T I+TL SA
Sbjct: 35 VMVVGPSGSGKSTLINTLFSA 55
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 30.3 bits (65), Expect = 4.5
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 690 KQVDLSGLINHPPWILKIIQLYETQRVRHGIMTLGPPGAGKTTCIHTLMSALSEIENPH 748
+ +L +++H I + + + RV H ++ GPPG GKT+ T+++ +I P+
Sbjct: 30 RPANLEDVVSHKDIISTLEKFISSNRVPH-MLFYGPPGTGKTS---TILACARKIYGPN 84
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 29.9 bits (64), Expect = 6.0
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 1899 AMAFFHSVNKEVLPLKANLMLQEARLKVAMDDLASAERQLEEREMSLRKVKEQYESAVSE 1958
A+A S+ K+V+P + ++ + +A +L E + E+E+ +V E + S+
Sbjct: 305 ALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFKAEVSETKNNGNSD 364
Query: 1959 KQQLTDAANVCLRKMTAATALINGLGGEKIRWTQQSKDF 1997
K L+ +T +T I + GE+ + Q K F
Sbjct: 365 KPSFD-----FLKYITESTNDIKAMTGEQKNYFLQIKKF 398
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 29.9 bits (64), Expect = 6.0
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1680 QKELGDGALRM--DTGLEKLREASISVEVLKKDLAVMEQDLALASEKADRVLTEVTER 1735
+KE +GA+ D L++LRE SVE L K ++++L + + + D V+ E+
Sbjct: 47 EKEQSNGAVGSIEDEELQRLRENQASVEALSKKPESIDRELGVEALEIDNVVKSDEEK 104
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.9 bits (64), Expect = 6.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 687 AIKKQVDLSGLINHPPWILKIIQLYETQRVRHGIMTLGPPGAGKTTCIHTLMSALSEIEN 746
A+ KQ L +I I + IQ+ ++R ++ +GP G GKT + L S + E
Sbjct: 103 ALAKQGKLDPVIGREEEIQRTIQIL-SRRTKNNPALVGPAGVGKTAIMEGLASRIIRGEV 161
Query: 747 P 747
P
Sbjct: 162 P 162
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 7.9
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 719 GIMTLGPPGAGKTTC 733
GIM GPPG GKT C
Sbjct: 215 GIMLYGPPGTGKTLC 229
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 29.5 bits (63), Expect = 7.9
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 655 LIDEDEPLFISLVADLFPNQMLEKTTYIELE-EAIKKQVDLSGLINHPPWILKIIQLYET 713
L+D+ +P+ + D P + +E + + IK+ V+L + HP +LYE
Sbjct: 169 LLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELP--LTHP-------ELYEE 219
Query: 714 QRVR--HGIMTLGPPGAGKT 731
++ G++ G PG GKT
Sbjct: 220 MGIKPPKGVILYGAPGTGKT 239
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 29.5 bits (63), Expect = 7.9
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 2331 LKQFLTIFDNS---ITKSTKS-NVTEERINIILKYLTHEVWAFTLRSLYERHKALFTLML 2386
LK L++++N+ I K T N+ +IN Y W T+R+L RH+ L +
Sbjct: 89 LKPSLSVWENNRLLIEKLTSILNIPSSQINHEF-YKNSSAWPITIRNLIHRHQPLSNITN 147
Query: 2387 AMKIDYQRE 2395
+ YQ E
Sbjct: 148 NELMKYQEE 156
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,643
Number of Sequences: 5004
Number of extensions: 595367
Number of successful extensions: 1837
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 70
length of query: 3112
length of database: 2,362,478
effective HSP length: 86
effective length of query: 3026
effective length of database: 1,932,134
effective search space: 5846637484
effective search space used: 5846637484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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