Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002147-TA|BGIBMGA002147-PA|IPR013602|Dynein heavy chain,
N-terminal region 2
(89 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122... 29 0.61
01_07_0311 + 42667114-42667132,42667336-42667367,42667449-426678... 29 0.61
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694... 28 1.1
02_01_0479 + 3453989-3454092,3454674-3454706,3454757-3454853,345... 27 1.4
07_03_0633 + 20120560-20123464,20123608-20123672 26 4.3
03_06_0678 - 35480711-35484658 26 4.3
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834... 26 4.3
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 25 5.6
03_06_0682 - 35516081-35518303 25 7.5
08_02_0648 - 19694538-19696569,19697151-19697998 25 9.9
06_03_1134 + 27892208-27892302,27892489-27892585,27893031-278930... 25 9.9
04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329... 25 9.9
01_03_0281 - 14570635-14574633 25 9.9
>02_01_0178 -
1223725-1223736,1223900-1224025,1224404-1224649,
1224731-1224922,1225059-1225138,1225233-1226826
Length = 749
Score = 28.7 bits (61), Expect = 0.61
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 2 DSTALKEWPAFFALKKTIDDFNDMCPLLELMANKAMKPRH 41
D ALKE AF+ +K+T++ + + P L + A RH
Sbjct: 604 DRMALKEQLAFYYIKRTLEAYPGVTPFEGLASGVAALARH 643
>01_07_0311 +
42667114-42667132,42667336-42667367,42667449-42667822,
42667895-42668028,42668147-42668303,42668994-42669098,
42669342-42669645,42670404-42670478,42671467-42672589,
42673686-42673727,42674017-42674111,42674199-42674239,
42674375-42674414
Length = 846
Score = 28.7 bits (61), Expect = 0.61
Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Query: 61 CL-KNILEAPLLQNKEDIE 78
CL KNIL AP++Q KED++
Sbjct: 80 CLHKNILHAPIVQKKEDVD 98
>06_01_0903 -
6939672-6939782,6940051-6940110,6940221-6940322,
6940464-6940513,6940686-6940750,6940849-6940931,
6941117-6941140,6941798-6941856,6942041-6942174,
6942823-6942884,6942908-6942976
Length = 272
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 4 TALKEWPAFFALKKTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYVF-ELDNED 59
TAL W FA ++ + C L++ NKA+ W +++E K + +L N D
Sbjct: 191 TALGMWQLLFA-ERHWPLIDHWCQFLQVRHNKAISRDTWSQLLEFVKTIDPQLSNYD 246
>02_01_0479 +
3453989-3454092,3454674-3454706,3454757-3454853,
3455023-3455081,3455545-3455619,3455726-3455798,
3455927-3456047,3456357-3456444,3456546-3456671,
3456771-3456880,3457004-3457152
Length = 344
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 3 STALKEWPAFFALKKTIDDFNDMCPLLELMANKAMKPR 40
+TA+ W A F +K D ++ L ++++N A+KPR
Sbjct: 165 ATAVSLWDADFYVKVDDDVHVNIATLGQILSNHALKPR 202
>07_03_0633 + 20120560-20123464,20123608-20123672
Length = 989
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 16 KKTIDDFNDMCPLLELMANKAMKPR----HWQRIMEVTKYVFELDNEDFCLKNI 65
KK + + + + PLL + ++ R HWQ+I ++F D +D L ++
Sbjct: 345 KKVLQNLHGL-PLLAEAIGRLLRQRLDKAHWQKISSSPWWLFSEDEDDVALPSV 397
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 4 TALKEWPAFFALKKTIDDFNDMCPLLELMAN 34
T KEW A + D+ N + P+L+L N
Sbjct: 390 TTKKEWDAILSRSTICDEENGILPILKLSYN 420
>02_04_0546 -
23782400-23782599,23782744-23782830,23782923-23783442,
23783801-23784000,23784457-23784561,23784923-23785020,
23785168-23785271
Length = 437
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 44 RIMEVTKYVF--ELDNEDFCLKNILEAPLLQNKEDIEV 79
+I +V Y+F +D F ++N+LE P +NK D +V
Sbjct: 283 QINKVDDYIFTYNMDARVF-MQNLLEVPCSENKSDSQV 319
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 40 RHWQRIMEVTKYVFELDNEDFCLKNILEAPLLQNKEDIEVPEKQARTRR 88
R QR E+ + F ++E+ + I + +Q +ED E +++AR R+
Sbjct: 401 RRGQRSEELKENTFREEDEEEYQEKIEQQLAMQEEEDPEKIKEEARRRK 449
>03_06_0682 - 35516081-35518303
Length = 740
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 4 TALKEWPAFFALKKTIDDFNDMCPLLELMAN 34
T KEW A D+ N + P+L+L N
Sbjct: 387 TTKKEWEAILRRSTICDEENGILPILKLSYN 417
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 28 LLELMANKAMKPRHWQRIMEVTKYVFELDNEDFCLKNIL 66
+ L+A K + W+R+ V E D+E +K IL
Sbjct: 385 IASLLATKPATKQEWERVKNSIFCVLERDHEMEVVKRIL 423
>06_03_1134 +
27892208-27892302,27892489-27892585,27893031-27893092,
27893198-27893409,27893487-27893566,27894208-27894328,
27894644-27894731,27894815-27894931,27895031-27895140,
27895334-27895482
Length = 376
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 3 STALKEWPAFFALKKTIDDFNDMCPLLELMANKAMKPR 40
+TA+ W A F +K D ++ L ++++N KPR
Sbjct: 200 ATAVSLWDADFYVKVDDDVHVNIATLGQILSNHVKKPR 237
>04_03_0669 +
18531419-18531820,18532589-18532690,18532882-18532948,
18533530-18533708,18533792-18534052,18535324-18535407,
18535517-18535564,18535654-18535718,18536849-18536897,
18538132-18538372,18539623-18539744,18539942-18540022,
18540094-18540168,18540408-18540550,18540662-18540812,
18540915-18541097
Length = 750
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 2 DSTALKEWPAFFALKKTIDDF 22
D T+ + W FFAL+ T D F
Sbjct: 25 DFTSRENWDKFFALRGTGDSF 45
>01_03_0281 - 14570635-14574633
Length = 1332
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 5 ALKEWPAFFALKKTIDDFNDMCPLLEL 31
A++EW A DD N + P+L+L
Sbjct: 375 AVEEWRAVLTKSSICDDENGILPILKL 401
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,010
Number of Sequences: 37544
Number of extensions: 77271
Number of successful extensions: 162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 13
length of query: 89
length of database: 14,793,348
effective HSP length: 68
effective length of query: 21
effective length of database: 12,240,356
effective search space: 257047476
effective search space used: 257047476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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