Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002147-TA|BGIBMGA002147-PA|IPR013602|Dynein heavy chain,
N-terminal region 2
(89 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 39 1e-04
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 0.31
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 0.55
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 25 2.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 2.2
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 23 5.1
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 23 5.1
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 23 5.1
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 23 6.7
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 23 8.9
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 23 8.9
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 39.1 bits (87), Expect = 1e-04
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 4 TALKEWPAFFALKKTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYVFELDNEDFCLK 63
T+ + + F K++++ D LL+ + + +KP HW + E+TK +LD E +
Sbjct: 1371 TSFQHFKLFTNTKQSLNQLKDCTLLLQKLKSCPLKPVHWISLFEITKSTEQLDFEKLLVS 1430
Query: 64 NIL 66
+IL
Sbjct: 1431 DIL 1433
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.5 bits (58), Expect = 0.31
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 15 LKKTIDDFNDMCPLLELMA--NKAMKPRHWQRIMEVTKYVFELDNEDFCLKNILEAPL 70
LKK ++ ND L +L A NK ++ + + + + EL+N++ +N+ +A L
Sbjct: 1091 LKKELESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASL 1148
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 0.55
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 36 AMKPRHWQRIMEVTKYVFELDNEDFCLKNILE 67
A+K ++W E++ Y+ LD E LK LE
Sbjct: 994 ALKIKNWDVCTELSSYLVSLDPEKRLLKTALE 1025
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 2.2
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 47 EVTKYVFELDNEDFCL-KNILEAPLLQNKEDIEVPEKQARTRR 88
+ T + +E D CL KN+ EAP + ++E +++ + + RR
Sbjct: 311 DATGFFYEQDAVAECLLKNMKEAPEIPHEETLKMMQLTDQIRR 353
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 18 TIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYVFELDNED 59
+I+D D +L ++ K K +H R ME++ + D+ +
Sbjct: 809 SIEDATDPQTILAILKQKKAKKKHAAREMEISSQIPSNDSSN 850
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 27 PLLELMANKAMKPRHWQRIMEVTKYVFELDNED 59
P L M A +P H++ + V +F + N D
Sbjct: 112 PKLSTMLEGASRPGHFRGVTTVVSKLFHIVNPD 144
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 44 RIMEVTKYVFELDNEDFCLKNILE--APLLQNKEDIEVPEKQ 83
+I+ K+ FELD +FC + + P+ +IE +++
Sbjct: 305 KILRKVKFPFELDAVEFCTPELSQKLIPVRDKLREIEKNDEE 346
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1 MDSTALKEWPAFFALKKTIDDFNDMCPLL 29
MDS+AL PAF K + N+ P L
Sbjct: 176 MDSSALHTSPAFSERLKLLSSSNNFSPQL 204
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 10 PAFFALKKTIDDFNDMCPLLELMANKAMKPRHWQRIME 47
P F I ++ P+L L+ +KP H++++++
Sbjct: 269 PFAFGFYNLICTWSKHDPVLALLGYSEVKPFHYEKVLQ 306
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 22.6 bits (46), Expect = 8.9
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 25 MCPLLELMANKAMKPRH 41
+C L+EL A++ ++P+H
Sbjct: 31 LCLLIELYAHRIIQPQH 47
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 48 VTKYVFELDNEDFCLKNILE 67
+TKY+ E + D KNIL+
Sbjct: 55 ITKYIIEQTDLDQAAKNILQ 74
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,037
Number of Sequences: 5004
Number of extensions: 15092
Number of successful extensions: 54
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 12
length of query: 89
length of database: 2,362,478
effective HSP length: 61
effective length of query: 28
effective length of database: 2,057,234
effective search space: 57602552
effective search space used: 57602552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)
- SilkBase 1999-2023 -