GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002146-TA|BGIBMGA002146-PA|undefined
         (99 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   1.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   2.8  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    24   4.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    24   4.9  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    23   6.5  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    23   8.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   8.6  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 53  EADILCIKIIEAVECESYVLWFIDFLIQKDRKKNYNY 89
           E  +L I  ++  E ++   W+  + ++KD K  Y Y
Sbjct: 460 EKQVLRIFNVQIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
          Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 60 KIIEAVECESYVLWFIDFLIQKDRKKNYNYLTS 92
          K+++ VE +   L +ID ++    K+ Y  LTS
Sbjct: 28 KVLKTVEFDKSALRYIDAILDHHLKQIYRNLTS 60


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 60  KIIEAVECESYVLWFIDFLIQKDRKKNYNYL 90
           KI++   C+     F D+ ++K  KKN + L
Sbjct: 143 KILDRALCDQSNQLFTDYTVKKKSKKNKSQL 173


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 11  PVNYIPDNAAGQIDIK 26
           P+  IP NAAG++D+K
Sbjct: 501 PLADIPRNAAGKVDLK 516


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
          Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 6  KQDELPVNYIPDNAAGQIDIKGSIDEVN 33
          K  ++PV ++ DN    ID + S++E +
Sbjct: 41 KWQDIPVTFLHDNEIALIDPETSMEEAS 68


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 15 IPDNAAGQIDIKGSIDEVNI 34
          +P    G I IKG+++ VNI
Sbjct: 26 LPATKLGSIAIKGALERVNI 45


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 24   DIKGSIDEVNINNPIGNQSEVIAIQGYLTEA 54
            ++ G  D++ +  PI N+S+++ +   LT A
Sbjct: 1250 EMVGRSDKLKVAEPINNKSKLLDLTPLLTPA 1280


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.141    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,213
Number of Sequences: 5004
Number of extensions: 17906
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 7
length of query: 99
length of database: 2,362,478
effective HSP length: 63
effective length of query: 36
effective length of database: 2,047,226
effective search space: 73700136
effective search space used: 73700136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)