Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002146-TA|BGIBMGA002146-PA|undefined
(99 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 28 1.1
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 27 2.4
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 26 4.3
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 26 5.6
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 25 7.5
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 25 9.9
09_03_0080 + 12149885-12150842,12150936-12151007,12151129-121513... 25 9.9
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 25 9.9
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 75 IDFLIQKDRKKNYNYLTSCLLIDY 98
+DFL+Q + KK Y +C +DY
Sbjct: 276 VDFLVQNNGKKIMVYFATCACVDY 299
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 8 DELPVNYIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAIQ 48
DEL + D AAG+ +G+ ++ N NP+ N SEVI ++
Sbjct: 163 DELKEEEVQDGAAGKRK-RGANNKRN-PNPVKNNSEVIEVE 201
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 34 INNPIGNQSEVIAIQGYLTE 53
I NP+ ++ E+IAI GY+T+
Sbjct: 590 IPNPLLDRMEIIAIAGYITD 609
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 32 VNINNPIGNQSEVIAIQGYLTEADILCI 59
VNI+ GN+S++I+ Y T D C+
Sbjct: 453 VNIHELHGNRSQIISTSSYFTLPDRHCL 480
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 29 IDEVNINNPIGNQSEVIAIQGYLTEADI 56
+D+VN+N P+G+ S V+ L A +
Sbjct: 207 LDDVNVNGPLGHDSLVLENLSSLMTASV 234
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 76 DFLIQKDRKKNYNYLTSCLLIDY 98
D L+ +D KK ++Y+T L+ Y
Sbjct: 390 DILLWRDEKKTFSYVTVLFLLFY 412
>09_03_0080 +
12149885-12150842,12150936-12151007,12151129-12151346,
12153607-12153830,12154004-12154592
Length = 686
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 24 DIKGSIDEVNINNPIGNQSEVIAIQGYLTEADIL-CIKIIE 63
+IK + +N+N P +++ I I + D L C+K +E
Sbjct: 248 NIKSEANHINVNAPKNEEAKAIFITDSDSSKDFLSCVKDLE 288
>05_07_0003 +
26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 16 PDNAAGQIDIKGSIDEVNINNPIGNQSEVI 45
P NA+G I + S+D NI +G+ +I
Sbjct: 823 PSNASGTIGARLSVDASNIRRLVGDSLALI 852
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.141 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,949
Number of Sequences: 37544
Number of extensions: 92226
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 9
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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