GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002146-TA|BGIBMGA002146-PA|undefined
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.9  
SB_51788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.9  
SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.9  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.4  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)                 26   5.8  
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  

>SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 14  YIP-DNAAGQIDIKGSIDE-VNINNPIGNQSEVIAIQGYLTEADILCIKIIEAV 65
           Y+P +NA G      ++ + +N     GN++EV+ ++  +  A I C K+I  V
Sbjct: 112 YVPCENALGSYQSYHNLTQPINYFTRYGNEAEVMLVKPQMVTAGIDCDKLIAPV 165


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 8    DELPVNYIPDNAAGQIDIKGSIDEVNI--NNPIGNQSEVIA-IQGYLTEADILC--IKII 62
            ++LP +YIP     ++   G++  +NI     I     VI  ++  LT+ ++      I+
Sbjct: 4849 EKLPPDYIPHEVKSRLQKMGALTSMNIFLRQEIDRMQRVITLVRHTLTDLNLAIEGTIIM 4908

Query: 63   EAVECESYVL--WFIDFL 78
              +  ES  L  WF +FL
Sbjct: 4909 SEISWESSTLGFWFTEFL 4926


>SB_51788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 28  SIDEVNINNPIGNQSEVIAIQGYLTEA 54
           S D  N++ PI  + E + I  YL EA
Sbjct: 213 SFDITNLSEPINRRPEAVVIHNYLREA 239


>SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 8   DELPVNYIPDNAAGQIDIKGSIDEVNI--NNPIGNQSEVIA-IQGYLTEADILC--IKII 62
           ++LP +YIP     ++   G++  +NI     I     VI  ++  LT+ ++      I+
Sbjct: 43  EKLPPDYIPHEVKSRLQKMGALTSMNIFLRQEIDRMQRVITLVRHTLTDLNLAIEGTIIM 102

Query: 63  EAVECESYVL--WFIDFL 78
             +  ES  L  WF +FL
Sbjct: 103 SEISWESSTLGFWFTEFL 120


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 51  LTEADILCIKIIEAVECESYVLWFIDFLIQKDRKKNYNYLTSCLL 95
           L + ++L  KI E     +  LW +DFL   DR++     + CL+
Sbjct: 412 LIDHNLLVGKIFELDTPRAVALWVVDFL--TDRQQRVKMSSDCLI 454


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 35   NNPIGNQS-EVIAIQ-GYLTEADILCIKIIEAVECE 68
            +N +G +S E++A++ GY ++ +++C +     ECE
Sbjct: 1675 SNDLGKESPELLALEEGYFSQRNLICKRYSTLSECE 1710


>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
          Length = 536

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 27  GSIDEVNINNPIGNQSEVIAIQGYLTEADILCI 59
           G+ + + I+ PI N + + A +GY T  +  CI
Sbjct: 359 GAQETIAISLPIDNTTGLTASRGYTTRIECYCI 391


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 13  NYIPDNAAGQIDIKGSIDEVNINNPI 38
           N +PDN A  + I   I  V++ NP+
Sbjct: 475 NALPDNVASIVKISKGISNVDLFNPL 500


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.141    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,008
Number of Sequences: 59808
Number of extensions: 114034
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 9
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)