GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002146-TA|BGIBMGA002146-PA|undefined
         (99 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...    26   3.9  
AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical ...    26   3.9  
Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical pr...    26   5.1  
AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.      26   5.1  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    25   9.0  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/36 (22%), Positives = 23/36 (63%)

Query: 13  NYIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAIQ 48
           N++P  +AG +++     ++ +++ + ++ E+IA Q
Sbjct: 171 NFLPSESAGGVELSARAGKIKVSSTLESRLELIANQ 206


>AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical
           protein Y50D7A.4 protein.
          Length = 852

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 44  VIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRKK 85
           ++   G L EA   C++     +  SYV W +  LIQK  KK
Sbjct: 62  ILNCMGKLQEAQD-CVRRGLVSDLRSYVCWHVFGLIQKTEKK 102


>Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical
           protein T23G7.1 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 5   EKQDELPVNYIPDNAAGQID-IKGSIDEVNINNPIGNQSEVIAIQGYLTEA 54
           E  DEL  +Y  +N   QID +K   D  NI   + +   V+     +T++
Sbjct: 94  EVADELVADYFQNNLIKQIDVVKQEYDMKNIRRRVYDALNVLLAMNIITKS 144


>AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 5   EKQDELPVNYIPDNAAGQID-IKGSIDEVNINNPIGNQSEVIAIQGYLTEA 54
           E  DEL  +Y  +N   QID +K   D  NI   + +   V+     +T++
Sbjct: 94  EVADELVADYFQNNLIKQIDVVKQEYDMKNIRRRVYDALNVLLAMNIITKS 144


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 13   NYIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAIQGYLTEADILCIKIIEAVECESY-- 70
            N I DN   ++ ++GSI +VN  +   +     A Q   T  D   I  +   ECES   
Sbjct: 964  NMISDNHPSELGVEGSIVKVNAAH---SGRIACAYQKPNTTTDNNIIIEVAVFECESSGG 1020

Query: 71   VLWFID--FLIQKD 82
            V WF +  F IQ++
Sbjct: 1021 VEWFREDSFRIQQN 1034


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.141    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,019
Number of Sequences: 27539
Number of extensions: 94111
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 12,573,161
effective HSP length: 70
effective length of query: 29
effective length of database: 10,645,431
effective search space: 308717499
effective search space used: 308717499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)