Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002146-TA|BGIBMGA002146-PA|undefined
(99 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1... 30 0.30
At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1... 28 1.2
At3g49280.1 68416.m05386 hypothetical protein 27 2.1
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro... 27 2.8
At3g53950.1 68416.m05960 glyoxal oxidase-related contains simila... 26 3.7
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 26 4.8
At3g49990.1 68416.m05466 expressed protein 26 4.8
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 26 4.8
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 26 4.8
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 25 6.4
At5g49230.1 68418.m06094 drought-responsive family protein simil... 25 8.5
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 25 8.5
>At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1
[Coturnix coturnix] GI:10441650, Yippee protein [Homo
sapiens] GI:5713281; contains Pfam profile PF03226:
Yippee putative zinc-binding protein
Length = 129
Score = 29.9 bits (64), Expect = 0.30
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 34 INNPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRK 84
+N G + + + + G T DI C+K C SYV W +F +K++K
Sbjct: 48 VNVYAGKKEDRMMMTGMHTVVDIYCVK------CGSYVGWKYEFAFEKNQK 92
>At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1
[Coturnix coturnix] GI:10441650, Yippee protein
[Drosophila melanogaster] GI:5713279; contains Pfam
profile PF03226: Yippee putative zinc-binding protein
Length = 128
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 34 INNPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRK 84
+N +G + + I G+ T ADI C V C S V W + K +K
Sbjct: 48 VNVTVGEKEHRVMITGWHTVADIFC------VSCGSLVGWKYEIAYDKSQK 92
>At3g49280.1 68416.m05386 hypothetical protein
Length = 176
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 66 ECESY-VLWFIDFLIQKDR--KKNYNYLTSCLLIDYP 99
E + Y +WF D K+R K N N TSCLL +YP
Sbjct: 42 EMQDYKAIWFSD-ATPKERMLKWNKNVGTSCLLCNYP 77
>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 453
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 14 YIPDNAAGQIDIKGSIDEVNINN 36
Y+ D +A + DIK D++N++N
Sbjct: 200 YLEDGSANKDDIKSDTDKINLDN 222
>At3g53950.1 68416.m05960 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 545
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 35 NNPIGNQSEVIAIQGYLTEADIL 57
N P G S ++AIQG T A+IL
Sbjct: 263 NYPSGGSSAMLAIQGDFTTAEIL 285
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 34 INNPIGNQSEVIAIQGYLTEADI 56
I NP+ ++ EVI+I GY+T+ +
Sbjct: 586 IPNPLLDRMEVISIAGYITDEKV 608
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 4 LEKQDELPVNYIPDNAAGQIDIKGSI 29
L+ ++ +PV ++P A Q D+K I
Sbjct: 411 LQGRERIPVEFLPGRRAEQTDVKAEI 436
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 1 MAILEKQDELPVNYIPDNAAGQIDIKGSIDEVNINN 36
+ I + + L + +PD+ AGQ++ + ++ NI++
Sbjct: 2597 IVIFQSEGHLSPSILPDDVAGQLESMSNDEKTNISS 2632
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 1 MAILEKQDELPVNYIPDNAAGQIDIKGSIDEVNINN 36
+ I + + L + +PD+ AGQ++ + ++ NI++
Sbjct: 2597 IVIFQSEGHLSPSILPDDVAGQLESMSNDEKTNISS 2632
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 11 PVNYIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAI 47
P YIP N+ +D G D+ +N S V+AI
Sbjct: 72 PRRYIPQNSERVLDAPGIADDFYLNLLDWGSSNVLAI 108
>At5g49230.1 68418.m06094 drought-responsive family protein
similar to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 211
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 4 LEKQDELPVNYIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAI 47
+E +D+L ++ A + DI G +++N+P+ ++ V +
Sbjct: 33 VEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPV 76
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 11 PVNYIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAI 47
P YIP N+ +D G +D+ +N + V+AI
Sbjct: 103 PRRYIPQNSERVLDAPGLMDDFYLNLLDWGSANVLAI 139
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.141 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,352
Number of Sequences: 28952
Number of extensions: 84946
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 12,070,560
effective HSP length: 70
effective length of query: 29
effective length of database: 10,043,920
effective search space: 291273680
effective search space used: 291273680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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