GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002145-TA|BGIBMGA002145-PA|undefined
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    28   0.43 
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   1.7  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   3.0  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 29  VYEPLPYKSLVALFAVKFMSAQEPKGPVKAPIMER 63
           +YEPLP  S +    ++ + A   K P   P++E+
Sbjct: 917 LYEPLPENSYLVAAELRVLRALRHKNPENIPLLEK 951


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 28  FVYEPLPYKSLVALFAVKFMSAQEPKGPVKAPIMERLPENVTKLSKRAARCTASIFVN 85
           F  + L   SL AL AV  ++A++ +  + A +   +     + +   A+C + +F+N
Sbjct: 87  FFVDMLGLGSLFALAAVNVLAARKLESELPASLEPSIGNRDQQKNSSLAKCFSRLFIN 144


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 83  FVNIYESVVTFLNDLAAIHFTTAELMRRRR 112
           F  IYE V +F+N++A +  ++ + +R  R
Sbjct: 474 FAQIYELVCSFVNNVAVMESSSEKQLRTSR 503


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,045
Number of Sequences: 5004
Number of extensions: 14779
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 4
length of query: 115
length of database: 2,362,478
effective HSP length: 64
effective length of query: 51
effective length of database: 2,042,222
effective search space: 104153322
effective search space used: 104153322
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)