GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002145-TA|BGIBMGA002145-PA|undefined
         (115 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0268 + 32758087-32758448,32758539-32759652                       27   2.8  
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47...    27   3.6  
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725...    27   3.6  
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47...    26   8.4  
04_03_0898 + 20660769-20660973,20661077-20661204,20661295-20661687     26   8.4  

>03_06_0268 + 32758087-32758448,32758539-32759652
          Length = 491

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 36  KSLVALFAVKFMSAQEPKGPVKAPIMERLPENVTKLSKRAARCTASIFVNIYESVVTFLN 95
           K+ V L A  + S Q+ + P        + + +T++ +  A  +A   VNIY  +  +LN
Sbjct: 163 KATVPLNADVYDSPQDQQVPSAGRFRADIADLMTQMVQFLANNSAPFTVNIYPFISLYLN 222

Query: 96  DLAAIHF 102
           D   + F
Sbjct: 223 DDFPVDF 229


>08_01_0068 +
           471729-472460,472578-472655,473270-473507,474130-474205,
           474820-474961,475326-475619,476037-476249
          Length = 590

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 22  RDLLAQFVYEPLPYKSLVALFAVKFMSAQEPKGPVKAPIMERLPE 66
           +D  A  V EPLP K    L  V+  +A EP+   +  + +  PE
Sbjct: 187 QDRKADSVSEPLPSKQETVLENVESETALEPRSSQELEVKQATPE 231


>02_05_1253 +
           35270040-35270044,35270213-35270297,35270809-35272590,
           35272710-35273237
          Length = 799

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 24  LLAQFVYEPLPYKSLVALFAVKFMSA 49
           LL  F YEP P+  ++ L   KF++A
Sbjct: 144 LLTAFTYEPHPFMVVLLLTTAKFLTA 169


>11_01_0062 -
           476027-476044,476791-477195,477287-477574,477653-477830,
           478005-478133,478531-478729,478832-478970,479130-479195,
           480459-480580,480672-480742,480819-480903,481335-481453,
           481577-481687,481945-482117,482375-482446,482768-482862,
           483361-483450,483550-483646
          Length = 818

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 57  KAPIMERLPENVTKLSKRAARCTASIFVNIYESVVTFLN 95
           K P ME LP N+ + S  A+   AS   N  E    FL+
Sbjct: 347 KEPTMEDLPSNLGQPSTSASSVDASYSANRIEDSQLFLS 385


>04_03_0898 +
          20660769-20660973,20661077-20661204,20661295-20661687
          Length = 241

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 51 EPKGPVKAPIMERLPENVTKLSKRAARCTASIFVNIYESVVTF 93
          +P+ P++A    R      K    AARC A +FV+ +E ++ +
Sbjct: 32 KPRNPLRANSNPRQSHPPMKKQAAAARCNA-LFVDRFEKIMMY 73


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,205
Number of Sequences: 37544
Number of extensions: 85544
Number of successful extensions: 263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 5
length of query: 115
length of database: 14,793,348
effective HSP length: 73
effective length of query: 42
effective length of database: 12,052,636
effective search space: 506210712
effective search space used: 506210712
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)