GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002145-TA|BGIBMGA002145-PA|undefined
         (115 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U07806-1|AAB60380.1|  761|Homo sapiens DNA topoisomerase I protein.    29   3.4  
U07804-1|AAB60379.1|  761|Homo sapiens DNA topoisomerase I protein.    29   3.4  
M60706-1|AAA61206.1|  765|Homo sapiens topoisomerase I protein.        29   3.4  
J03250-1|AAA61207.1|  765|Homo sapiens TOP1 protein.                   29   3.4  
BC018935-1|AAH18935.2|  689|Homo sapiens bin3, bicoid-interactin...    29   3.4  
BC000556-1|AAH00556.2|  689|Homo sapiens bin3, bicoid-interactin...    29   3.4  
AL035652-1|CAI19767.1|  765|Homo sapiens topoisomerase (DNA) I p...    29   3.4  
AL022394-1|CAI42886.1|  765|Homo sapiens topoisomerase (DNA) I p...    29   3.4  

>U07806-1|AAB60380.1|  761|Homo sapiens DNA topoisomerase I protein.
          Length = 761

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 51  EPKGPVKAPIMERLPENVT-KLSKRAARCTASIFVNIYESVVTFLNDLAAIHFTTAELMR 109
           E KGPV AP  E LPENV      +  + +        E V TF   +    +TT E+ R
Sbjct: 217 EHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA-----EEVATFFAKMLDHEYTTKEIFR 271

Query: 110 R 110
           +
Sbjct: 272 K 272


>U07804-1|AAB60379.1|  761|Homo sapiens DNA topoisomerase I protein.
          Length = 761

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 51  EPKGPVKAPIMERLPENVT-KLSKRAARCTASIFVNIYESVVTFLNDLAAIHFTTAELMR 109
           E KGPV AP  E LPENV      +  + +        E V TF   +    +TT E+ R
Sbjct: 217 EHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA-----EEVATFFAKMLDHEYTTKEIFR 271

Query: 110 R 110
           +
Sbjct: 272 K 272


>M60706-1|AAA61206.1|  765|Homo sapiens topoisomerase I protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 51  EPKGPVKAPIMERLPENVT-KLSKRAARCTASIFVNIYESVVTFLNDLAAIHFTTAELMR 109
           E KGPV AP  E LPENV      +  + +        E V TF   +    +TT E+ R
Sbjct: 221 EHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA-----EEVATFFAKMLDHEYTTKEIFR 275

Query: 110 R 110
           +
Sbjct: 276 K 276


>J03250-1|AAA61207.1|  765|Homo sapiens TOP1 protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 51  EPKGPVKAPIMERLPENVT-KLSKRAARCTASIFVNIYESVVTFLNDLAAIHFTTAELMR 109
           E KGPV AP  E LPENV      +  + +        E V TF   +    +TT E+ R
Sbjct: 221 EHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA-----EEVATFFAKMLDHEYTTKEIFR 275

Query: 110 R 110
           +
Sbjct: 276 K 276


>BC018935-1|AAH18935.2|  689|Homo sapiens bin3, bicoid-interacting
           3, homolog (Drosophila) protein.
          Length = 689

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 2   HKDVRNERRSNQSVKLANPARDLLAQFVYEPLPYKSLVALFAVKFMSAQEPKG---PVKA 58
           H   +  RR N       P+  LL   +++PL   SL+     + ++A+ PK    P K 
Sbjct: 164 HPAFKRRRRVNSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKG 223

Query: 59  --PIMERLPENVT 69
             P+   +P+++T
Sbjct: 224 RDPVEILIPKDIT 236


>BC000556-1|AAH00556.2|  689|Homo sapiens bin3, bicoid-interacting
           3, homolog (Drosophila) protein.
          Length = 689

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 2   HKDVRNERRSNQSVKLANPARDLLAQFVYEPLPYKSLVALFAVKFMSAQEPKG---PVKA 58
           H   +  RR N       P+  LL   +++PL   SL+     + ++A+ PK    P K 
Sbjct: 164 HPAFKRRRRVNSDCDSVLPSNFLLGGNIFDPLNLNSLLDEEVSRTLNAETPKSSPLPAKG 223

Query: 59  --PIMERLPENVT 69
             P+   +P+++T
Sbjct: 224 RDPVEILIPKDIT 236


>AL035652-1|CAI19767.1|  765|Homo sapiens topoisomerase (DNA) I
           protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 51  EPKGPVKAPIMERLPENVT-KLSKRAARCTASIFVNIYESVVTFLNDLAAIHFTTAELMR 109
           E KGPV AP  E LPENV      +  + +        E V TF   +    +TT E+ R
Sbjct: 221 EHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA-----EEVATFFAKMLDHEYTTKEIFR 275

Query: 110 R 110
           +
Sbjct: 276 K 276


>AL022394-1|CAI42886.1|  765|Homo sapiens topoisomerase (DNA) I
           protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 51  EPKGPVKAPIMERLPENVT-KLSKRAARCTASIFVNIYESVVTFLNDLAAIHFTTAELMR 109
           E KGPV AP  E LPENV      +  + +        E V TF   +    +TT E+ R
Sbjct: 221 EHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA-----EEVATFFAKMLDHEYTTKEIFR 275

Query: 110 R 110
           +
Sbjct: 276 K 276


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,510,492
Number of Sequences: 224733
Number of extensions: 424193
Number of successful extensions: 1113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 73,234,838
effective HSP length: 80
effective length of query: 35
effective length of database: 55,256,198
effective search space: 1933966930
effective search space used: 1933966930
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)