GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002145-TA|BGIBMGA002145-PA|undefined
         (115 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80064-1|AAC24158.1|  972|Drosophila melanogaster DNA topoisomer...    28   3.4  
M74557-1|AAA28951.1|  972|Drosophila melanogaster topoisomerase ...    28   3.4  
BT023755-1|AAZ41763.1|  974|Drosophila melanogaster RE58921p pro...    28   3.4  
AE014298-2126|AAN09660.1|  581|Drosophila melanogaster CG6146-PB...    28   3.4  
AE014298-2125|AAX52496.1|  974|Drosophila melanogaster CG6146-PC...    28   3.4  
AE014298-2124|AAF48440.1|  974|Drosophila melanogaster CG6146-PA...    28   3.4  

>U80064-1|AAC24158.1|  972|Drosophila melanogaster DNA topoisomerase
           I protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 48  SAQEPKGPVKAPIMERLPENV 68
           S  E KGPV AP  ER+P NV
Sbjct: 441 STLEHKGPVFAPRYERVPRNV 461


>M74557-1|AAA28951.1|  972|Drosophila melanogaster topoisomerase I
           protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 48  SAQEPKGPVKAPIMERLPENV 68
           S  E KGPV AP  ER+P NV
Sbjct: 441 STLEHKGPVFAPRYERVPRNV 461


>BT023755-1|AAZ41763.1|  974|Drosophila melanogaster RE58921p
           protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 48  SAQEPKGPVKAPIMERLPENV 68
           S  E KGPV AP  ER+P NV
Sbjct: 443 STLEHKGPVFAPRYERVPRNV 463


>AE014298-2126|AAN09660.1|  581|Drosophila melanogaster CG6146-PB,
          isoform B protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 48 SAQEPKGPVKAPIMERLPENV 68
          S  E KGPV AP  ER+P NV
Sbjct: 50 STLEHKGPVFAPRYERVPRNV 70


>AE014298-2125|AAX52496.1|  974|Drosophila melanogaster CG6146-PC,
           isoform C protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 48  SAQEPKGPVKAPIMERLPENV 68
           S  E KGPV AP  ER+P NV
Sbjct: 443 STLEHKGPVFAPRYERVPRNV 463


>AE014298-2124|AAF48440.1|  974|Drosophila melanogaster CG6146-PA,
           isoform A protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 48  SAQEPKGPVKAPIMERLPENV 68
           S  E KGPV AP  ER+P NV
Sbjct: 443 STLEHKGPVFAPRYERVPRNV 463


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,791,720
Number of Sequences: 52641
Number of extensions: 157035
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 24,830,863
effective HSP length: 75
effective length of query: 40
effective length of database: 20,882,788
effective search space: 835311520
effective search space used: 835311520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)