GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002145-TA|BGIBMGA002145-PA|undefined
         (115 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical ...    29   0.61 
Z99281-13|CAB16520.1|  350|Caenorhabditis elegans Hypothetical p...    28   1.4  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical pr...    26   7.6  
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    25   10.0 

>AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical
           protein F33E11.3 protein.
          Length = 651

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 61  MERLPENVTKLSKRAARCTASIFVNIYESVVTFL 94
           MERLP +V KLS   A+ TA +F N+ E   T L
Sbjct: 247 MERLPPHVEKLSSEYAQ-TARLFSNLIEITDTVL 279


>Z99281-13|CAB16520.1|  350|Caenorhabditis elegans Hypothetical
           protein Y57G11C.19 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 41  LFAVKFMSAQEPKGPVKAPIMERLPENV-TKLSKRAARCTASIFVNIYESVVTFLND 96
           L A  F++   PK  +K  I+ER    + T+L+K   +     +V++ + VV  +N+
Sbjct: 152 LLAKNFVNLFSPKSEIKCAIVERANRTLKTRLAKYMTQKYNRRYVDVLQQVVNGINN 208


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
           protein C28G1.4 protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 6   RNERRSNQSVKLANPARDLLAQFVYEPLPYKSLVALFAVKFMSAQEPKGPVKAPIMER 63
           ++ R+   + KLA  A++++   VY+  P  S   +  V+  ++ E    VK P ++R
Sbjct: 177 QSNRQRKPTAKLAETAQEVVPFMVYKNSPSPSPPPMLEVQQPTSSETCSVVKGPALKR 234


>Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical
           protein F54C8.2 protein.
          Length = 261

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 51  EPKGPVKAPIMERLPENVTKL-SKRAARCTASIFVNIYESVVTFLNDLAAIHFTTAELMR 109
           E  G V A IM+RL  +  ++ S      +A+ + ++   +  + NDL A+ F   E  R
Sbjct: 13  EKNGRV-ARIMQRLQHDTQRVTSVPGFNTSATGYADLIALLDQYKNDLEAVGFNDLEQAR 71

Query: 110 RR 111
           RR
Sbjct: 72  RR 73


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 53  KGPVKAPIMERLPENVTKLSKRAARCTASIFVNIYESVVTFLNDLAAIH 101
           K  + AP  +RL + V  L +RA  C      ++Y     F  +    H
Sbjct: 166 KNSMNAPDYQRLADQVFALFERALHCPTDQLEDVYVLAEQFCTEFKQHH 214


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,702
Number of Sequences: 27539
Number of extensions: 80283
Number of successful extensions: 263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 5
length of query: 115
length of database: 12,573,161
effective HSP length: 72
effective length of query: 43
effective length of database: 10,590,353
effective search space: 455385179
effective search space used: 455385179
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)