GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002145-TA|BGIBMGA002145-PA|undefined
         (115 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.91 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.91 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   6.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 50   QEPKGPVKAPIMERLPENVTKLSKRAARCTA 80
            Q   GP+  P++ +  E+V  +     RC A
Sbjct: 1092 QVGSGPLSEPLLTQTMEDVPSIPPEDVRCAA 1122


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 50   QEPKGPVKAPIMERLPENVTKLSKRAARCTA 80
            Q   GP+  P++ +  E+V  +     RC A
Sbjct: 1088 QVGSGPLSEPLLTQTMEDVPSIPPEDVRCAA 1118


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 58  APIMERLPENVTKLSKRAARCTASIFVNIYESVVTFLNDLAAIHF 102
           A IM +LP+ V   +    R    +  N   S   FLN  A + F
Sbjct: 528 ANIMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSF 572


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 42  FAVKFMSAQEPKGPVKAPIMERLPENVTKLSKRAAR 77
           FAV+ M      G +KA   +     VTK +++A +
Sbjct: 424 FAVRDMRQTVAVGVIKAVTFKDAAGKVTKAAEKAQK 459


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,091
Number of Sequences: 429
Number of extensions: 826
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 115
length of database: 140,377
effective HSP length: 50
effective length of query: 65
effective length of database: 118,927
effective search space:  7730255
effective search space used:  7730255
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)