GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002145-TA|BGIBMGA002145-PA|undefined
         (115 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff...    27   4.1  
At3g10350.1 68416.m01241 anion-transporting ATPase family protei...    26   5.4  
At1g02580.1 68414.m00209 maternal embryogenesis control protein ...    26   7.1  
At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam...    25   9.4  
At1g16750.1 68414.m02011 expressed protein contains Pfam profile...    25   9.4  
At1g01990.1 68414.m00117 expressed protein                             25   9.4  

>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 818

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 17  LANPARDLLAQFVYEPLPYKSLVALFAVKFMSAQEPKGPVKAPIMERLPENVTKLSKRA 75
           L+   R+ +A      LP+K L+   A K     +    +  P+ E   EN+ K  K A
Sbjct: 207 LSTIIREYIALRSVSSLPFKDLIFTAAEKSCGFGDEAWKISGPLNEFFNENLNKSQKEA 265


>At3g10350.1 68416.m01241 anion-transporting ATPase family protein
           similar to SP|O43681 Arsenical pump-driving ATPase (EC
           3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
           resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
           (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
           Anion-transporting ATPase; contains non-consensus GA
           donor splice site at intron 5
          Length = 411

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 33  LPYKSLVALFAVKFMSAQEPKGPVKAPIMERLPENVTKLSK--RAARCTASIFVNI 86
           L  K   A  A+K +  +E KGP  A  +E+L E + K+ +  R    T  + V I
Sbjct: 264 LRQKITSATSAIKSVFGKEEKGPDAADKLEKLRERMVKVRELFRDTESTEFVIVTI 319


>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
           MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
           GI:3089625 from [Arabidopsis thaliana]; contains Pfam
           profile PF00856: SET domain
          Length = 689

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 46  FMSAQEPKGP-VKAPIMERLPENVTKLSKRAARCTASIFVNIYESVVTFLN 95
           F+    P  P VK PI+E+LP ++T +  ++++  A     I +  + +LN
Sbjct: 114 FLDEDVPLLPSVKLPIVEKLPRSITWVFTKSSQLMAESDSVIGKRQIYYLN 164


>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 777

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 41  LFAVKFMSAQEPKGPVKAPIMERLPENVTKLSK 73
           L+  KF+   E  G  +    ++L EN+ K++K
Sbjct: 92  LYETKFLKKSEEGGEFEESFFKKLDENLNKVNK 124


>At1g16750.1 68414.m02011 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 529

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 66  ENVTKLSKRAARCTASIFVNIYES 89
           +N  +LSK   RC  +IFV++ E+
Sbjct: 175 DNANELSKEMIRCMRNIFVSLGET 198


>At1g01990.1 68414.m00117 expressed protein
          Length = 245

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 30 YEPLPYKSLVALFAVKFMSAQEPKG-PVKAPI 60
          Y P   ++ ++LFA+   S+ EP   PVK P+
Sbjct: 25 YRPSSLQNPISLFAITSPSSSEPPSPPVKHPL 56


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,927
Number of Sequences: 28952
Number of extensions: 69548
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 12,070,560
effective HSP length: 72
effective length of query: 43
effective length of database: 9,986,016
effective search space: 429398688
effective search space used: 429398688
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)