GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002144-TA|BGIBMGA002144-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (1013 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    32   0.35 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    31   1.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    30   1.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    29   2.5  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    29   3.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    29   4.3  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    28   7.5  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    28   7.5  
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    27   10.0 

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 458  CINLNRTYRETYIFVKNHPFLPNTEQFSFSENYVFGKFDTFCKR 501
            C  +N   R T   + NHPF+   E+F+F +  +   +D  CKR
Sbjct: 1074 CFTVNADVRPTAEELLNHPFMKCDEEFNFKDTNL---YDMLCKR 1114


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 558 NNEFDKDYHAFEDKINALKESIGCTIEENFSSVWETPQGIKFLTRFEKVSQKIQITK-LR 616
           + EFD DY+  ++  +      G T + NFS+  +    +     F++ ++KIQ  K ++
Sbjct: 65  DKEFDLDYYLKDETESIQSPFEGFTAQPNFSNFNKQGNTMNREANFQRTNEKIQRNKSIK 124

Query: 617 RIK 619
           R+K
Sbjct: 125 RVK 127


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/80 (18%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 536  VHTFEEAKKAVTTCQYDYLDYRNNEFDKDYHAFEDKINALKESIGCTIEENFSSVWETPQ 595
            VH F +  + V +    + +   NE++ +Y   +  +  +      + E+ FS +WE+  
Sbjct: 2186 VHLFTKVFERVLSTTISHPEEATNEWELNYFGLQSWLKLVLADPKKSCEKEFSKIWES-- 2243

Query: 596  GIKFLTRFEKVSQKIQITKL 615
             +++L  F+    ++ +++L
Sbjct: 2244 -MRYLILFKHAWVRLSVSRL 2262


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 409 FYNTSERISSLMVKITNQMIETCKQYITCRFKDTIWSQERSL 450
           +Y T   + S+ +K+T +  E    +I      T+W +ER L
Sbjct: 634 YYETKRELLSIEIKVTRENYEKGVYWIRNLLAKTVWDRERML 675


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 112 KQPPPQVTWKRKLFLSDGWDV-----KFTGVCIYMFRINVSKQLPEEGFHKDLFCGILN 165
           K P  ++ W+R + L DG+D      +F  +C   F  N   Q+    F  D  C  LN
Sbjct: 28  KPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDEDCLFLN 86


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 695 GCVAVNLDKNIKLLIRESDCLVKMGVPLPIVCHSLYAKKYYFTLVNDSLQFLLEDYLRT 753
           GCV + L     + +R++  L    V  P++C ++ +   + T++  S+QF+   Y+RT
Sbjct: 699 GCVIMQLTMMGLMSLRKAYWLST--VIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRT 755


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/41 (24%), Positives = 24/41 (58%)

Query: 550 QYDYLDYRNNEFDKDYHAFEDKINALKESIGCTIEENFSSV 590
           + + L+ + ++FD+     +D++N++KE     +EEN   +
Sbjct: 865 EIEELESKMSDFDQSVEELQDEMNSIKEDWVSKLEENVQCI 905


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 156 HKDLFCGILNAEKVGMVTAIERVMEHVYMSALAHPSSDGDEDETRFPIVKNQLLPGLRSF 215
           H+DL C  +  + + + T      EH++++ L  P S       RFP V + +   L + 
Sbjct: 865 HRDLVCRWIETQVLLLATFAPHWSEHIWLTTLKKPQS--IHVSGRFPQVSSPVNTALSNS 922

Query: 216 CSALKVCEDVCNQVNLFEDGLALMAPIQDHTQLKDMAKNPNTITMLEERVTEWIKKVMEV 275
              ++    V  +     +   L    +    L D +K       + E+  EW  +   V
Sbjct: 923 LLYIRTLSRVIREA----EAAQLKRQKKGKGMLFDPSKPKRLTVFVAEKFPEW--QAQYV 976

Query: 276 ASLLIFPNHAFN 287
           A L  + N + N
Sbjct: 977 ALLQKYYNESEN 988


>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
            subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 954  NAVNEMRRYYSRKVVDVLIRVKRRTLDVIIKQFSSDALATDDVSEIVN 1001
            N V E+R  Y    VDVL  ++   +   +K+ S     T+++  IVN
Sbjct: 67   NDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECS-----TEEIDNIVN 109


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,444,627
Number of Sequences: 5004
Number of extensions: 187346
Number of successful extensions: 576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 13
length of query: 1013
length of database: 2,362,478
effective HSP length: 80
effective length of query: 933
effective length of database: 1,962,158
effective search space: 1830693414
effective search space used: 1830693414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)