Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002144-TA|BGIBMGA002144-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
(1013 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 36 0.16
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 32 2.7
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 32 2.7
02_03_0357 + 18075171-18077240 32 2.7
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 32 2.7
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 31 6.2
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 31 6.2
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 35.9 bits (79), Expect = 0.16
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 264 RVTEWIKKVMEVASLLIFPNHAFNDQILSESEQLRREVDSSGPQDELEYWKKRGAQFSQL 323
RV E ++K++E + PN + + S E +S GP +L W +RG+ + +
Sbjct: 671 RVAEALEKLVESYTQKDLPNAVGSPDVAKVSNSSINE-ESDGPSPKLSDWSRRGS--ADM 727
Query: 324 VSYLQENEVQLTLSCLQLANSKVIK 348
+ YLQE + ++L ++ S K
Sbjct: 728 LDYLQEADSTISLDDIKNLPSMTCK 752
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 31.9 bits (69), Expect = 2.7
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 42 RLEFTFQLLIDGTGLPRHAIMDHVFEGNMLDDINQLFLPHMRNKLLWYY 90
R+ F + GTG+ A+ DHVF+ NMLD + Q P M + WY+
Sbjct: 66 RVVDVFAMPQSGTGVSVEAV-DHVFQTNMLDMLKQTGRPEM--VVGWYH 111
>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 31.9 bits (69), Expect = 2.7
Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 897 LIAEDDPQSSGAASSTNESTSSGQQDWSAVWECFESPHRLLSTPAGGLSKSMQEMVKNAV 956
L+ + ++ A+SST++S S G + S+ + S HR GG K+ V +
Sbjct: 260 LMEQQKHNATSASSSTSQSQSPGDEAPSSSCQSSVSGHR-ADRRKGGSRKAAASPVSGRM 318
Query: 957 NEMRRYYSRKVVDVLIRVKRRTLDVIIKQFSSDALATDDVSEIVN 1001
N++R +++ +D + ++ + +++ D + +V+
Sbjct: 319 NQVREFWATVPMDRRLAFLSTSISELKSHYATAMHKEKDAASLVS 363
>02_03_0357 + 18075171-18077240
Length = 689
Score = 31.9 bits (69), Expect = 2.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 261 LEERVTEWIKKVMEVASLLIFPNHAFNDQILSESEQLRRE 300
L +++ +W++ V V +L+ DQ+LS S++LR E
Sbjct: 296 LNDKMKKWVQAVKTVVRVLLAGERRLCDQVLSVSDELREE 335
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 31.9 bits (69), Expect = 2.7
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 42 RLEFTFQLLIDGTGLPRHAIMDHVFEGNMLDDINQLFLPHMRNKLLWYY 90
R+ F + GTG+ A+ DHVF+ NMLD + Q P M + WY+
Sbjct: 66 RVVDVFAMPQSGTGVSVEAV-DHVFQTNMLDMLKQTGRPEM--VVGWYH 111
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 30.7 bits (66), Expect = 6.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 581 CTIEENFSSVWETPQG---IKFLTRFEKVSQKIQITKLRRI 618
C N VW+T G + T+FEK +KI +T L R+
Sbjct: 970 CQGINNLQDVWDTSDGQCVVMLQTKFEKFFEKIDLTLLNRL 1010
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 30.7 bits (66), Expect = 6.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 581 CTIEENFSSVWETPQG---IKFLTRFEKVSQKIQITKLRRI 618
C N VW+T G + T+FEK +KI +T L R+
Sbjct: 970 CQGINNLQDVWDTSDGQCVVMLQTKFEKFFEKIDLTLLNRL 1010
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,536,781
Number of Sequences: 37544
Number of extensions: 1041334
Number of successful extensions: 2512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2507
Number of HSP's gapped (non-prelim): 12
length of query: 1013
length of database: 14,793,348
effective HSP length: 89
effective length of query: 924
effective length of database: 11,451,932
effective search space: 10581585168
effective search space used: 10581585168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -