GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002144-TA|BGIBMGA002144-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (1013 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            29   0.81 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            29   0.81 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    27   3.3  
AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.            25   7.6  
AY183376-1|AAO24766.1|  128|Anopheles gambiae cytochrome b5 prot...    25   10.0 
AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    25   10.0 

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 638  HPVLRGLP----ASADMMRKYTNTRTLMNNYEDMMKAVWMNQNLWD-VDESLNNSLLKID 692
            HP + G P     S+ ++R  T  + L  N  D + A W   ++ D + ++ N+    + 
Sbjct: 2300 HPTIAGHPNAVTLSSLLVRVITQRKNLAKNMFDQLCAGWYKDDIPDAIADTCNSVWTILS 2359

Query: 693  ETGCVAVNLDKNIKLLIRE-SDCLVKMGVPLPIVCHSLYAK 732
              G +    + ++  + +E  D L +    LP +  +LY K
Sbjct: 2360 NEGLIGPKSNFSMTAINQELRDLLSEYASHLPAIIGALYHK 2400


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 638  HPVLRGLP----ASADMMRKYTNTRTLMNNYEDMMKAVWMNQNLWD-VDESLNNSLLKID 692
            HP + G P     S+ ++R  T  + L  N  D + A W   ++ D + ++ N+    + 
Sbjct: 2301 HPTIAGHPNAVTLSSLLVRVITQRKNLAKNMFDQLCAGWYKDDIPDAIADTCNSVWTILS 2360

Query: 693  ETGCVAVNLDKNIKLLIRE-SDCLVKMGVPLPIVCHSLYAK 732
              G +    + ++  + +E  D L +    LP +  +LY K
Sbjct: 2361 NEGLIGPKSNFSMTAINQELRDLLSEYASHLPAIIGALYHK 2401


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 569 EDKINALKESIGCTIEENFSSVWETPQGIK 598
           ED I AL   IG +     +S+WE P G K
Sbjct: 438 EDIIAALDAKIGASAGVVSASIWELPDGSK 467


>AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.
          Length = 1152

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/56 (21%), Positives = 29/56 (51%)

Query: 894 FEFLIAEDDPQSSGAASSTNESTSSGQQDWSAVWECFESPHRLLSTPAGGLSKSMQ 949
           F +   E   +++  ++  + +T+SG   W+ V E + S + + +  A  L +S++
Sbjct: 703 FGYRFIELHLENNNISALPDSTTASGSSGWAEVRELYASNNSIAALAADQLPRSLR 758


>AY183376-1|AAO24766.1|  128|Anopheles gambiae cytochrome b5 protein.
          Length = 128

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 995  DVSEIVNAHKGYERALLEE 1013
            DV+E +N H G E  LLE+
Sbjct: 31   DVTEFLNEHPGGEEVLLEQ 49


>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 901 DDPQSSGAASSTNESTSSGQQDWSAVWECFESPHRLLSTPAGGLSKSMQEMVKNAVNEMR 960
           DD  SS ++SS++  + S     S+     E       +PA    K  +E V+   N  R
Sbjct: 363 DDSSSSSSSSSSDSDSDSSSSSDSSSSSSEEEAENFKISPAEQYKKQAKE-VERRGNRNR 421

Query: 961 RYYSRKVVDVLIRVKRRTLDVIIKQ--FSSDALATDDVS 997
           R  +           +R    + KQ   SSD+ ++DD S
Sbjct: 422 RDLNAFKEKQYYEAYKRDQYRLRKQNDTSSDSSSSDDSS 460


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 970,591
Number of Sequences: 2123
Number of extensions: 38334
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 10
length of query: 1013
length of database: 516,269
effective HSP length: 71
effective length of query: 942
effective length of database: 365,536
effective search space: 344334912
effective search space used: 344334912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)