GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002144-TA|BGIBMGA002144-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (1013 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80027-13|AAC48130.2|  200|Caenorhabditis elegans Hypothetical p...    32   2.4  
Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical pr...    31   4.1  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    31   5.5  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    31   5.5  
Z81525-7|CAE17780.1|  263|Caenorhabditis elegans Hypothetical pr...    30   9.5  

>U80027-13|AAC48130.2|  200|Caenorhabditis elegans Hypothetical
           protein T28A11.18 protein.
          Length = 200

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 11/125 (8%)

Query: 339 LQLANSKVIKQWRDTDHKITFCYNEAK---DNAKFVQAME---KCCHSL-YL-DDPVKIK 390
           L + N K +K+++D  H +  CYN+ K    N + + A++   K C +  Y+ DD  K  
Sbjct: 56  LDVKNKKRLKEYKDDCHNVLSCYNKIKCLGTNGEKIPAVKYIGKHCRATDYVHDDFAKCS 115

Query: 391 DSILSLLQTVRLIHSVSQFYNTSERISSLMVKITNQMIETCKQYITC---RFKDTIWSQE 447
           D + +   T            T+E++     ++ ++  +TC     C     K+T   QE
Sbjct: 116 DKLNAKKSTCFDDWDPIPNNVTTEKVPKKFDQLMSESCKTCFGKDNCMMKEIKETCGQQE 175

Query: 448 RSLVR 452
             L R
Sbjct: 176 WDLFR 180


>Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical
           protein F32A11.7 protein.
          Length = 657

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 341 LANSKVIKQWRDTDHKITFCYNEAKDNAKFVQAMEKCCHSLYLDDPVKIK-DSILSLLQT 399
           L  +  + +W+DT  +IT    E K+  K    M+K   S+Y D   K+K +  ++   +
Sbjct: 153 LKKTDKVSKWQDTIERITKKAEEIKEQKKMEDFMQKRM-SIYADAAEKMKQNKKIAKDDS 211

Query: 400 VRLIHSVSQFYNTSERISSLMVKITNQMIE 429
           ++  + + QF + +++I  ++    N+M E
Sbjct: 212 LKEFNDLEQFID-NDQIKEVLRNRKNKMTE 240


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 51  IDGTGLPRHAIMDHVFEGNMLDDINQLFLPHMRNKLLWY-YQDVEEIEQRPVPENTKSRQ 109
           +D  G+        + EGN+++  + + +P       W+ Y  + +IE+R +PE    + 
Sbjct: 57  LDEEGVQSTKEAPQLAEGNVIEQTHYIVVPSYAG---WFDYNAIHQIEKRAMPEFFNGKN 113

Query: 110 QGKQPPPQVTWK 121
           + K P   V ++
Sbjct: 114 KSKTPDVYVAYR 125


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 51  IDGTGLPRHAIMDHVFEGNMLDDINQLFLPHMRNKLLWY-YQDVEEIEQRPVPENTKSRQ 109
           +D  G+        + EGN+++  + + +P       W+ Y  + +IE+R +PE    + 
Sbjct: 57  LDEEGVQSTKEAPQLAEGNVIEQTHYIVVPSYAG---WFDYNAIHQIEKRAMPEFFNGKN 113

Query: 110 QGKQPPPQVTWK 121
           + K P   V ++
Sbjct: 114 KSKTPDVYVAYR 125


>Z81525-7|CAE17780.1|  263|Caenorhabditis elegans Hypothetical
           protein F33A8.10 protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 914 ESTSSGQQDWSAVWECFESPHRLLSTPAGGLSKSMQEMVKNAVNEMRRYYS---RKVVDV 970
           ES S G QD    +E  + P    +      +K ++E +K   +E +  Y+   R V+D 
Sbjct: 142 ESASVGDQD--KFYEIVQHP----TWSGAEKNKKIEEFMKTMSDERQSMYTNYRRDVIDK 195

Query: 971 LIRVKRRTLDVIIKQFSSDAL 991
            +  KRR +D  + Q S +A+
Sbjct: 196 DLEDKRRNVDRAVSQMSKEAV 216


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,817,541
Number of Sequences: 27539
Number of extensions: 1004859
Number of successful extensions: 2676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2676
Number of HSP's gapped (non-prelim): 5
length of query: 1013
length of database: 12,573,161
effective HSP length: 89
effective length of query: 924
effective length of database: 10,122,190
effective search space: 9352903560
effective search space used: 9352903560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)