GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002144-TA|BGIBMGA002144-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (1013 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    31   0.062
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   1.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   9.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 30.7 bits (66), Expect = 0.062
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 661 MNNYEDMMKAV-WMNQNLWDVDESLNNSLLKIDET 694
           ++N  D++K + W+ +NL  +D  +NN+ + ID T
Sbjct: 65  LSNQNDILKVIEWVEKNLGAIDILINNATINIDVT 99


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 11/64 (17%)

Query: 82  MRNKLLWYYQDV-------EEIEQRPVPENTKSRQQGKQPP---PQVTWKRKLFLSDGWD 131
           ++N LLW +Q+        +E+    + E   ++++ K P    P+  W RK FL   W 
Sbjct: 110 LKNVLLWDFQECTFISVNGKEVHSGNI-EAVTTKEKAKFPQEFFPECKWSRKGFLRTRWS 168

Query: 132 VKFT 135
           +  T
Sbjct: 169 ISGT 172


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)

Query: 359 FCYNEAKDNAKFVQAMEKCC--HSL--YLDDPV 387
           F  +E+KD   F+Q   +CC  HSL  Y D P+
Sbjct: 127 FLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPI 159


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 710  RESDCLVKMGVPLPIVCHSLYAKKYYFTLVNDSLQFLLEDYLRTVRRVKL 759
            R+  C+++   P P+V  +++A +    L+  +  FLL ++ R   R  L
Sbjct: 1102 RDLPCVLRASTPAPVVLEAVHASRR--VLIVLTRNFLLTEWSRFEFRAAL 1149


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 91   QDVEEIEQRPVPENTKSRQQGKQPPPQ 117
            Q  +  +Q+P P+  + +QQ +QP  Q
Sbjct: 1520 QSQQPQQQQPQPQQQQQQQQQQQPQQQ 1546


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,065
Number of Sequences: 429
Number of extensions: 11833
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 7
length of query: 1013
length of database: 140,377
effective HSP length: 65
effective length of query: 948
effective length of database: 112,492
effective search space: 106642416
effective search space used: 106642416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)