Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002143-TA|BGIBMGA002143-PA|undefined
         (175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    30   1.2  
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    28   3.6  

>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 19  PPYCLVHLFHSHIA-QLVAARCHAPFT 44
           P YC VH+ H   A Q+ AA+  APFT
Sbjct: 144 PDYCTVHVIHKGKAIQVKAAKAPAPFT 170


>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 70  AAPACRASRRTAIRTALGCGQGGSQKIEEWNVKDILWYIGHEPKRNPQTRWAIT 123
           AA  C ++    + T  G G GG++   +W +  + WY+    K +P T  A+T
Sbjct: 62  AASCCDSASAAGVTTGGGAGGGGAKGAMDWRLL-LAWYLLALDK-HPITTKAVT 113


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.137    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,518,871
Number of Sequences: 37544
Number of extensions: 198709
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 2
length of query: 175
length of database: 14,793,348
effective HSP length: 77
effective length of query: 98
effective length of database: 11,902,460
effective search space: 1166441080
effective search space used: 1166441080
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)