GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002143-TA|BGIBMGA002143-PA|undefined
         (175 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   4.3  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   9.9  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    20   9.9  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 116 PQTRWAITFIPRNKEKRSKEKPW 138
           P++   ++ + R  E+ ++EKPW
Sbjct: 224 PESVRPLSLVVRRCEEPTEEKPW 246


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/10 (70%), Positives = 10/10 (100%)

Query: 128 NKEKRSKEKP 137
           ++EK+SKEKP
Sbjct: 75  SEEKKSKEKP 84


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 121 AITFIPRNKEKRSKEKPWFGKTIAGAVTEDQL 152
           ++ F  R K+ R+K +      IAGA+   +L
Sbjct: 546 SMAFATRMKQSRTKIEALVKSHIAGAIVTYEL 577


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.137    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,580
Number of Sequences: 317
Number of extensions: 1462
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 114,650
effective HSP length: 53
effective length of query: 122
effective length of database: 97,849
effective search space: 11937578
effective search space used: 11937578
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 40 (20.2 bits)