GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002143-TA|BGIBMGA002143-PA|undefined
         (175 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    32   0.20 
AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical ...    28   3.2  
AF039047-8|AAB94228.1|  303|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 99  WNVKDILWYIGHEPKRNPQTRWAITFIPRNKEKRSKEKPWFGKTIAGAVTEDQLKWMSAL 158
           W + D +WY+G EP R     +  T I   K   S  + + G   +     D+ +W++AL
Sbjct: 930 WPMDDSIWYVGTEPTRKSPNLFNATMICSTKTGYSSSR-FPGFCFSFKEETDRNRWLTAL 988


>AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical
           protein Y59A8B.2 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 2   PQCVHRHRRARRSELW-PPPYCLVHL 26
           P+C       R S+LW PPP  ++HL
Sbjct: 233 PKCKEPRASTRTSKLWQPPPVMIIHL 258


>AF039047-8|AAB94228.1|  303|Caenorhabditis elegans Hypothetical
           protein K11D12.8 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 85  ALGCGQGGSQKIEEWNVKDILWYIGHEPKRNPQTR 119
           A+ CG+ G   +    ++DI+W   +  +RN   R
Sbjct: 81  AMDCGRNGPPMMRSGTLRDIVWNNANRRRRNDSQR 115


>Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical
           protein M01B2.6 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 91  GGSQKIEEWNVKDILWYIGHEPKRNPQTRWAITFIPRNKEKRSKEKPWFGKTIAGAVT 148
           GGS++ E+WNV +       E  R+ +    I F  R      K   + GK +   VT
Sbjct: 285 GGSERREQWNVDNTAAIYSCETMRSSKFNIVIPFFARLWNNVGKPIDFPGKEVYRNVT 342


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.137    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,307,819
Number of Sequences: 27539
Number of extensions: 150462
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 4
length of query: 175
length of database: 12,573,161
effective HSP length: 77
effective length of query: 98
effective length of database: 10,452,658
effective search space: 1024360484
effective search space used: 1024360484
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)