GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002143-TA|BGIBMGA002143-PA|undefined
         (175 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 60  YFIGCLPFVFAA 71
           +F+GC  F+FAA
Sbjct: 297 WFLGCTIFLFAA 308


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 85  ALGCGQGGSQKIEEW 99
           AL C  GG  +I EW
Sbjct: 609 ALICPDGGRAEINEW 623


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 85  ALGCGQGGSQKIEEW 99
           AL C  GG  +I EW
Sbjct: 609 ALICPDGGRAEINEW 623


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 85  ALGCGQGGSQKIEEW 99
           AL C  GG  +I EW
Sbjct: 609 ALICPDGGRAEINEW 623


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.137    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,650
Number of Sequences: 429
Number of extensions: 2055
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 175
length of database: 140,377
effective HSP length: 54
effective length of query: 121
effective length of database: 117,211
effective search space: 14182531
effective search space used: 14182531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 41 (20.6 bits)