Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0042 - 11542707-11542730,11542936-11543011,11543316-115434...    29   3.9  
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750...    28   8.9  

>08_02_0042 -
           11542707-11542730,11542936-11543011,11543316-11543425,
           11544562-11544747,11545421-11547697
          Length = 890

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 23  RNTARKLFAHLHFLHTMSHANKM--GAENLASVWAPTIMPTALTSNNLQTA 71
           RN A   +++   +  +  A K+  G E LA +W   + PT +T N L  A
Sbjct: 215 RNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDA 265


>02_02_0179 +
           7500647-7500779,7503021-7503222,7503356-7503427,
           7503655-7503726,7504212-7504283,7504711-7504782,
           7505045-7505116,7505209-7505280,7505688-7505759,
           7506215-7506292,7506670-7506729,7506810-7506848,
           7506949-7506998,7507110-7507480,7508467-7508662,
           7508856-7508936,7509694-7509848,7510302-7510512,
           7510648-7510882,7510995-7511145,7511813-7512181
          Length = 944

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 127 KAWIHVNDRSQCYQVALTPNKTSSDVCIELCEKAKTESHLLMLE 170
           K W++ +D S  Y  +  PN   S++  +   K  TE H++ LE
Sbjct: 71  KTWVNASD-SNSYPKSSYPNFPVSNLTCDCSFKNNTECHVISLE 113


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,948,390
Number of Sequences: 37544
Number of extensions: 248598
Number of successful extensions: 627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 2
length of query: 266
length of database: 14,793,348
effective HSP length: 81
effective length of query: 185
effective length of database: 11,752,284
effective search space: 2174172540
effective search space used: 2174172540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)