Silkworm BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (266 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   3.9  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   6.9  
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    23   9.1  

>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
          acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 66 NNLQTAWSSKEVLVVRDLIANFEAIWEP 93
          N++   W+S E   VRDL      +W+P
Sbjct: 64 NDMNVRWNSSEYGGVRDLRIPPHRLWKP 91


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 66  NNLQTAWSSKEVLVVRDLIANFEAIWEP 93
           N++   W++ E   VRDL      IW+P
Sbjct: 96  NDMNLRWNTSEYGGVRDLRIPPHRIWKP 123


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 138 CYQVALTPNKTSSDVCIELCEKAKTESHLLMLEEVVCNESMRRIVH 183
           C+ V +   KT S     LC  +     LL +  V+CN S+R++++
Sbjct: 238 CWVVRIPIGKTYS-----LCTNSFPLGTLLCVGIVICNLSVRKVLY 278


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,804
Number of Sequences: 2123
Number of extensions: 8650
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 516,269
effective HSP length: 63
effective length of query: 203
effective length of database: 382,520
effective search space: 77651560
effective search space used: 77651560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)