GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    42   7e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    33   0.043
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    33   0.056
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    31   0.17 
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    27   3.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   6.5  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1   MKDETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMP 60
           ++DE+ R     R ++ L     +T R L  HL  +   S  NKM   NLA +W PTI+ 
Sbjct: 608 VEDESRRRDAVHRAINDLPDANYSTIRHLTIHLAKIKENSDVNKMSTNNLAIIWGPTIIK 667

Query: 61  TA 62
            A
Sbjct: 668 QA 669


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 14  VMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMPTALTSNNLQTAWS 73
           VM +L     +  R L AHL  +   +  N M ++N+++V+APT+M   +   +LQ A  
Sbjct: 891 VMKTLHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKNVSTVFAPTLMRDKVNRFDLQHA-- 948

Query: 74  SKEVLVVRDLIANFEAI 90
           +K+   ++ ++ N + I
Sbjct: 949 TKKSTALQFMLDNVDKI 965


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 32.7 bits (71), Expect = 0.056
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 14  VMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM 59
           V+ SL        + +  HL  +   SHAN+M ++NLA V++PT++
Sbjct: 857 VIKSLPPAHAEILQLIIRHLARVAAYSHANRMTSKNLAVVFSPTLI 902


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 132  VNDRSQCYQVALTPNKTSSDVCIELCEKAKTESHLLMLEEVVC---NESMRRIVHIDEIV 188
            +ND+ Q YQ+  T NK       E     K+ +  L  +E  C   +++  + + + EI 
Sbjct: 1098 LNDKDQLYQLQATKNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQEIH 1157

Query: 189  LDVVLRWGYWDEDDRKDNYL-LVRDNKTLQDMDSLRQTTSLVCGEMRFANESM 240
             +++L+    D ++ K  Y  L  D + L+D+D+  Q  S    ++ F +ES+
Sbjct: 1158 ENLLLKVS--DLENYKKKYEGLQLDLEGLKDVDTNFQELSKKHRDLTFNHESL 1208


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 4   ETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM 59
           +  R   YRR +  L +  R     L   L      S  N M A+NLA+++ P I+
Sbjct: 160 DNERVEMYRRRIDELPIPNRQLLLYLLDLLSVFAMNSSKNLMTADNLAAIFQPGIL 215


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 110 RVLSNSAPAPHRAAGDLKAWIH 131
           R +  SAP   R  GDL AWIH
Sbjct: 286 RPIELSAPDTVRFIGDLLAWIH 307


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,124,558
Number of Sequences: 5004
Number of extensions: 41011
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 8
length of query: 266
length of database: 2,362,478
effective HSP length: 72
effective length of query: 194
effective length of database: 2,002,190
effective search space: 388424860
effective search space used: 388424860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)