GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (266 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12981| Best HMM Match : RhoGAP (HMM E-Value=0)                      43   3e-04
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        40   0.002
SB_42987| Best HMM Match : RhoGAP (HMM E-Value=2.7e-26)                33   0.18 
SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0)                      33   0.24 
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)                      32   0.56 
SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)                 31   0.74 
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.98 
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_2853| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   5.2  
SB_18987| Best HMM Match : OEP (HMM E-Value=0.61)                      28   9.1  
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)                28   9.1  

>SB_12981| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 251

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 3   DETSRHAEYRRVMSSLSLVPR---NTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM 59
           ++++R+++   + S +  +PR   +T + L  HLH +   S  N+M A+NLA VW P +M
Sbjct: 160 EQSTRNSKLGALKSLVGQLPRINFDTLKLLLGHLHKVMGFSEVNRMHAQNLAIVWGPNMM 219

Query: 60  PTALTSNNL 68
                + N+
Sbjct: 220 RPRYDAGNI 228


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 1   MKDETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM- 59
           M D   +      +  SL    R TA  LF HL  +   S  +KMG  NL++V+ P ++ 
Sbjct: 431 MADAEEKRETMLELFRSLPTPNRLTACYLFQHLRKVAEKSEVHKMGLNNLSTVFGPNVLR 490

Query: 60  PTALTSNNLQTAWSSKEVL 78
           P+  TS+ +  A  + +V+
Sbjct: 491 PSPKTSSPMDLAQGTLDVM 509


>SB_42987| Best HMM Match : RhoGAP (HMM E-Value=2.7e-26)
          Length = 139

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 2   KDETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM 59
           +D+  R  E  + +  L      T + L  HLH +      N M  ENL+ V+ PT+M
Sbjct: 47  QDKHLRIEELSKALGELPQAHYETMKFLMGHLHRVSQRRSKNMMTEENLSIVFGPTLM 104


>SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 583

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 3   DETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM-PT 61
           DE  R      V+  L      T   L  HL  + + +    M A+NLA VWAP ++ P 
Sbjct: 109 DEKERKVAIHHVVQQLPPPHYRTLEYLLQHLAKVASHAGQTAMHAKNLAIVWAPNLLKPR 168

Query: 62  ALTSNNLQTAWSSKEVLVVRDLIANFEAIWE 92
           +    +      + + ++V  LI N   +++
Sbjct: 169 SQEYGSTALLEINVQAIIVEYLIRNAAELFD 199


>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1250

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 25  TARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM 59
           TA K+  HLH +      N M   NL  V+ PT++
Sbjct: 392 TAAKIIEHLHLVAANEDENSMSGSNLGIVFGPTLL 426


>SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 180 RIVHIDEIVLDVVLRWGYWDEDDRKDNYLLVRDNKTLQDMDSLRQT 225
           R   + E VL  V+RWG   E   KDNYL+++ N   + +     T
Sbjct: 186 RAFQVHEKVLPAVIRWGELGELS-KDNYLIIKPNHIAESIQPFVST 230


>SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)
          Length = 564

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 133 NDRSQCYQVALTPNKTSSDVCIELCEKAKTESHLLMLEEVVCNESMRRIVHIDEIVLDVV 192
           ND S+ Y++ L  N +S    + L E   + ++ L L+E V + + R  +H+DE V    
Sbjct: 368 NDSSRAYRLHLDENDSSRAYRLHLDENVSSRTYRLHLDENVSSRTYR--LHLDENVSSRT 425

Query: 193 LRWGYWDEDDRKDNYLLVRDN 213
            R    +    + N   + DN
Sbjct: 426 YRLHLDENVSSRTNRFHLDDN 446



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 133 NDRSQCYQVALTPNKTSSDVCIELCEKAKTESHLLMLEEVVCNESMRRI-VHIDEIVLDV 191
           ND S+ Y++ L  N +S    + L E   + ++ L L+E   N+S R   +H+D+ V   
Sbjct: 136 NDSSRTYRLHLEENDSSRTYRLHLDENVSSRTYRLHLDE---NDSSRTYRLHLDDNVSSR 192

Query: 192 VLRWGYWDEDDRKDNYLLVRDNKTLQDMDSLRQTTSLVCGE-MRFANESMKTFKQHMFE 249
             R  + DE+     Y L  D         L    ++     +   N S +T++ H+ E
Sbjct: 193 TYRL-HLDENVSSRTYRLHLDENNSSRTYCLHLDENVSSRTYLDDENVSSRTYRLHLDE 250



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 133 NDRSQCYQVALTPNKTSSDVCIELCEKAKTESHLLMLEEVVCNESMRRI-VHIDEIVLDV 191
           ND S+ Y++ L  N +S    + L E   + ++ L L+E   N+S R   +H+DE     
Sbjct: 485 NDSSRAYRLHLDENVSSRTYRLHLDENDSSRAYRLHLDE---NDSSRTYRLHLDENDSSR 541

Query: 192 VLRWGYWDEDDRKDNYLL 209
             R  + DE+D    Y L
Sbjct: 542 AYRL-HLDENDSSRAYRL 558


>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 3   DETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMPTA 62
           D   R A  R ++  L  V     + L  HL+ +   S  N M + NLA+V  PTI+ T 
Sbjct: 448 DADERLAVLRGLVMQLPKVNFAVLKYLMCHLNRVTEYSKENLMESRNLATVIFPTILRTE 507

Query: 63  LTSNNLQT 70
             S  LQT
Sbjct: 508 FES--LQT 513


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/91 (23%), Positives = 44/91 (48%)

Query: 1   MKDETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMP 60
           ++++  R  + + ++ +LS+      ++    L+ +   +  N M A NLA   AP+++ 
Sbjct: 767 IENDAERAQQIKLILENLSVYSIEILKRFLCVLYHIADNADVNNMTAYNLAVCVAPSMLW 826

Query: 61  TALTSNNLQTAWSSKEVLVVRDLIANFEAIW 91
               S+   T  SS    VV+ +I +F  I+
Sbjct: 827 APKGSSVAATEQSSAVPPVVQFMIEHFVDIF 857


>SB_2853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 58 IMPTALTSNNLQTAWSSKEVLVVRDLIANF 87
          ++P A +S+++  AW+S E L+VRDL   F
Sbjct: 35 VVPDATSSSDVCLAWNSGEKLLVRDLDVRF 64


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 158 EKAKTESHLLM-LEEVVC-NESMRRIVHIDEIVLDVVLRWGYWDEDDRKDNYLLVRDNKT 215
           E  K+E  +++  ++V+C ++S    V  +E V D +L+W   D+  RKD   ++ +N  
Sbjct: 137 EIVKSEEFMMLNSDDVMCLSKSDNLTVPSEEAVFDAILKWIKHDQVQRKDYLPVMLENVR 196

Query: 216 L 216
           L
Sbjct: 197 L 197


>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 800

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 131 HVNDR--SQCYQVALTPNKTSSDVCIELCEKAKTESHLLMLEEVVCNESMRR 180
           H ND   ++  ++ L+PNK S  + +     +KT    + + +VV N S RR
Sbjct: 55  HENDPRDTELRRIYLSPNKNSRTLVLRRILNSKTSEDRIKIRDVVSNLSERR 106


>SB_18987| Best HMM Match : OEP (HMM E-Value=0.61)
          Length = 355

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 58  IMPTALTSNNLQTAWSSKEVLVVRDLIANF 87
           ++P A +S+++  AW+S E L+V DL   F
Sbjct: 74  VVPDATSSSDVCLAWNSGEKLLVMDLDVRF 103


>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
          Length = 303

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 156 LCEKAKTESHLLMLEEVVCNESMRRIVHIDEI--VLDVVLRWGYWDEDDRKD 205
           LC + K    L  + E V  E+ +++VH+D +    D    WG   + + +D
Sbjct: 72  LCNERKRSISLSSIREGVARETTQQVVHMDALDSSSDEGAEWGSASDSENED 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,182,829
Number of Sequences: 59808
Number of extensions: 300721
Number of successful extensions: 732
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 18
length of query: 266
length of database: 16,821,457
effective HSP length: 81
effective length of query: 185
effective length of database: 11,977,009
effective search space: 2215746665
effective search space used: 2215746665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)