Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
(266 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 52 3e-07
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 39 0.003
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 36 0.040
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 31 0.64
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 31 0.64
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 31 0.64
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 31 0.85
Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z73425-7|CAA97790.1| 1059|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC025726-10|AAK73915.3| 344|Caenorhabditis elegans Hypothetical... 28 7.9
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 52.4 bits (120), Expect = 3e-07
Identities = 55/263 (20%), Positives = 118/263 (44%), Gaps = 21/263 (7%)
Query: 9 AEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMPTALTSNNL 68
A Y +++++ LV R+T +KL HL + + N+ ENLA V+A ++ T +
Sbjct: 681 ARYAQLINTFELVHRSTLKKLIGHLKNVSEHAQENRASVENLAKVFAASLFLTDAMDEKV 740
Query: 69 QTAWSSKEVLVVRDLIANFEAIWEPTXXXXXXXXXXXXXLMRVLSNSAPAPHRAAGDLKA 128
+ + ++ V+ L ++ +++ + + + P+P D
Sbjct: 741 FSESYNHQINVLIHLTTGYDVVFQISIEEELSRQMVNDAEKKSFNAKKPSP-----DFIV 795
Query: 129 WIHVNDR-SQCYQVALTPNKTSSDVCIELCEK----AKTESHLLMLEEVVCNESMRRIVH 183
IHV ++ ++ + V + + S +VC E K +S + E + +RR+ +
Sbjct: 796 AIHVWEKENRPFNVKM--SLASEEVCREAIAKRGFDGPPDSPYAIFECLAGGNLIRRLPN 853
Query: 184 IDEIVLDVVLRWGYWDEDDRKDNYLLVRDNKTLQDMDSLRQTTSLVCGEMRFANESMKTF 243
+ + VL+W W + KD YLL +K + + S G+++ A +TF
Sbjct: 854 AQK-MSKCVLQWIDW---NCKDAYLLFDHDKYQFNGTDM----SCFTGKIKIAEPGSRTF 905
Query: 244 KQHMFELQN-RCLCYFKDKQILK 265
K + +++N + F+++++ K
Sbjct: 906 KSYEVKIENGTSIVAFRNEKLWK 928
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 1 MKDETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMP 60
M + T+R ++ ++S L R T + L HL+ + + S N+M NLA V+ PT+
Sbjct: 708 MPNATTRFKKFEELLSRLPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLFH 767
Query: 61 TALTSNNLQT 70
+ NL T
Sbjct: 768 NGDGAVNLAT 777
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 43 NKMGAENLASVWAPTIMPTALTSNNLQTAWSSKEVLVVRDLIANFEAIWE 92
NKM A NLA+++AP+I+ + A + +V++V +I+N E I++
Sbjct: 670 NKMDARNLATIFAPSILRVDHDKLHETLAENEHQVIIVETMISNVEEIFK 719
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 13 RVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM 59
RV+ L R+T LF H + S NKM E +A + AP +M
Sbjct: 534 RVICELPQANRDTLAYLFIHWRKVIAQSSRNKMNCEAMARMVAPAVM 580
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 5 TSRHAEYRRVMSSLSLVPR---NTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMPT 61
++ H ++ + L +PR +T R L HL + S NKM NLA ++ P+I+
Sbjct: 891 STHHNRLHKLRNLLRKLPRPHYDTLRFLIVHLSEITKHSDVNKMECRNLALMFGPSIVRP 950
Query: 62 ALTSNNLQTAWSSKEVLVVRDLI 84
+ + S + ++ LI
Sbjct: 951 SDDNMATMVTHMSDQCKIIETLI 973
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 5 TSRHAEYRRVMSSLSLVPR---NTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMPT 61
++ H ++ + L +PR +T R L HL + S NKM NLA ++ P+I+
Sbjct: 769 STHHNRLHKLRNLLRKLPRPHYDTLRFLIVHLSEITKHSDVNKMECRNLALMFGPSIVRP 828
Query: 62 ALTSNNLQTAWSSKEVLVVRDLI 84
+ + S + ++ LI
Sbjct: 829 SDDNMATMVTHMSDQCKIIETLI 851
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 31.1 bits (67), Expect = 0.85
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 4 ETSRHAEYRRVMSSLSLVPRNTARKLFA-------HLHFLHTMSHANKMGAENLASVWAP 56
E RH E+ ++S +L P RK F H ++ H+ + A ++ W+P
Sbjct: 283 EIQRHLEHHHLVSPHNLAPCRKCRKHFGTAKYFLIHHYYYHSTDLTSSAPASTCSTRWSP 342
Query: 57 TIMPTALTSNNLQTAWSSKEVLVVRDLI 84
T TS + T+ SS + ++D I
Sbjct: 343 M---TVSTSESSSTSESSSGMPTLQDPI 367
>Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical
protein F47A4.3b protein.
Length = 742
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 4 ETSRHAEYRRVMSSLSLVPR---NTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMP 60
E S + + SL +P TA+ L HL L M ++NLA VW+P +
Sbjct: 363 EDSLSEKVESLRFSLETMPEAHYRTAKFLMEHLTRLCKSKSLTDMTSKNLAIVWSPNLFR 422
Query: 61 TALTSNNLQT 70
T N T
Sbjct: 423 PPPTLNGADT 432
>Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical
protein F47A4.3a protein.
Length = 759
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 4 ETSRHAEYRRVMSSLSLVPR---NTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMP 60
E S + + SL +P TA+ L HL L M ++NLA VW+P +
Sbjct: 380 EDSLSEKVESLRFSLETMPEAHYRTAKFLMEHLTRLCKSKSLTDMTSKNLAIVWSPNLFR 439
Query: 61 TALTSNNLQT 70
T N T
Sbjct: 440 PPPTLNGADT 449
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 146 NKTSSDVCI-ELCEKAKTESHLLMLEEVVCNESMRRIVHID 185
NK D+C E+C K +H+L + +V +E+ I +ID
Sbjct: 311 NKNFCDICNKEVCNKYFLRTHMLKMHGIVIDENKTVIANID 351
>Z73425-7|CAA97790.1| 1059|Caenorhabditis elegans Hypothetical
protein F12F6.5 protein.
Length = 1059
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 12 RRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIMP 60
R ++S L + R LFA L L + N M NLA + PT++P
Sbjct: 638 RELVSKLPVSHVLLLRFLFAFLSHLCEFADENMMEPHNLAICFGPTLLP 686
>AC025726-10|AAK73915.3| 344|Caenorhabditis elegans Hypothetical
protein Y71G12B.16 protein.
Length = 344
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 33 LHFLHTMSHANKMGAENLASVWAPTIM 59
LHF+H+ H + G SV APTI+
Sbjct: 153 LHFIHSSIHIRRQGPYLSVSVRAPTIV 179
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,089,253
Number of Sequences: 27539
Number of extensions: 227642
Number of successful extensions: 520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 12
length of query: 266
length of database: 12,573,161
effective HSP length: 80
effective length of query: 186
effective length of database: 10,370,041
effective search space: 1928827626
effective search space used: 1928827626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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