GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (266 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 48   ENLASVWAPTIMPTALTSNNLQTAWSSKEVLVVRDLIANFEAIWEP 93
            E++ S+    +   ALTS +LQ +W          +I  ++  +EP
Sbjct: 1108 EDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLHYEP 1153


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 48   ENLASVWAPTIMPTALTSNNLQTAWSSKEVLVVRDLIANFEAIWEP 93
            E++ S+    +   ALTS +LQ +W          +I  ++  +EP
Sbjct: 1104 EDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLHYEP 1149


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 61   TALTSNNLQTAWSSKEVLVVRDLIANFEAIWEPT 94
            T LTS  ++ +W S  +     +I  ++ I  P+
Sbjct: 1091 TTLTSQTIRISWMSPPLSAANGVITGYKVIVIPS 1124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,283
Number of Sequences: 429
Number of extensions: 2187
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 140,377
effective HSP length: 57
effective length of query: 209
effective length of database: 115,924
effective search space: 24228116
effective search space used: 24228116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)