GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002142-TA|BGIBMGA002142-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (266 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61530.1 68418.m07720 small G protein family protein / RhoGAP...    29   2.4  
At2g37070.1 68415.m04549 expressed protein                             28   7.5  
At2g20470.1 68415.m02390 protein kinase, putative contains prote...    28   7.5  

>At5g61530.1 68418.m07720 small G protein family protein / RhoGAP
           family protein contains Pfam domain, PF00620: RhoGAP
           domain
          Length = 376

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 1   MKDETSRHAEYRRVMSSLSLVPRNTARKLFAHLHFLHTMSHANKMGAENLASVWAPTIM 59
           +KD  S     R+ +  LS V  NT   + A L  +   S  NKM + +LA   AP IM
Sbjct: 233 IKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIM 291


>At2g37070.1 68415.m04549 expressed protein
          Length = 420

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 43  NKMGAENLASVWAPTIMPTALTSNNLQTAWSSKEVLVVRDLIANFEAIWEPT 94
           NKM   N  SV      PT  T+  L+   +SK+V VV+D      ++ +PT
Sbjct: 275 NKMAKGNKKSVHGDNGPPTDYTTQTLKPLNNSKDVSVVQDDPKPSASMMKPT 326


>At2g20470.1 68415.m02390 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 596

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 166 LLMLEEVVCNESMRRIVHIDEIVLDVVLRWGYWDEDDRKDNYLLVR-DNKTLQDMDSLRQ 224
           LLM ++ +  E  +  V    + ++ + R  Y   D + DN LL R  +  L D    + 
Sbjct: 212 LLMRKDTLTEEEAKFYVAETVLAIESIHRHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKP 271

Query: 225 TTSLVCGEMRFANESMKTFKQ 245
                 GE  F+N S  + +Q
Sbjct: 272 LDCSAIGENDFSNNSNGSTEQ 292


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,710,267
Number of Sequences: 28952
Number of extensions: 207615
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 12,070,560
effective HSP length: 80
effective length of query: 186
effective length of database: 9,754,400
effective search space: 1814318400
effective search space used: 1814318400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)