GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002141-TA|BGIBMGA002141-PA|IPR001849|Pleckstrin-like
         (567 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.96 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   2.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   2.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   3.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   5.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   6.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   6.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.96
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 407 NVLNKSTKQTLPKIEVVERPPVHTQPVP 434
           NV   +  Q +P+I ++   PV+  PVP
Sbjct: 772 NVPQNTNSQAIPRIPILPMIPVYCVPVP 799


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 203 SRELDDNSNEHLTYDTPKPSRTNSIVSFGSFPEIPERRKNRESVEVMRQNSMYENWTLPF 262
           SRE + NS     Y   +  R     S G   +  ER +++E+  +   N  Y+N+   +
Sbjct: 264 SREREQNS-----YKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY 318

Query: 263 QAKK 266
            +KK
Sbjct: 319 NSKK 322


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 203 SRELDDNSNEHLTYDTPKPSRTNSIVSFGSFPEIPERRKNRESVEVMRQNSMYENWTLPF 262
           SRE + NS     Y   +  R     S G   +  ER +++E+  +   N  Y+N+   +
Sbjct: 275 SREREQNS-----YKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY 329

Query: 263 QAKK 266
            +KK
Sbjct: 330 NSKK 333


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 18  DPLKQPVPLPRTKVPPNDRGSASEILRSISSVSK 51
           D ++ P+    +K PPND G  ++  R   S+++
Sbjct: 181 DTIRIPIVRSLSKSPPNDEGIETDSDRRKGSIAR 214


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 361 PTERVQNRDKNSNWFVSDSDSKSITEDETKQSNSVIQRFSRRLKLD 406
           PT R++ R +N      D D     E+E ++         +RLKLD
Sbjct: 262 PTRRLRKRRQNDGEGADDRDDDE--ENEEEEDGRGQSEAEKRLKLD 305


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 359  EKPTERVQNRDKNSNWFVSDSDSKSITEDETKQSNSVIQRFSRRLK-LDNVLNKSTKQTL 417
            E P    +N D+N++ F    +S  I+E E  +   V + +    +  D +  +  ++ +
Sbjct: 1858 EPPPPPPRNHDQNNSSFNDSKESNEISEAECDRDQLVNRNYGVNARGKDGMTTEEMRKLI 1917

Query: 418  PKIEVVER 425
             + E   R
Sbjct: 1918 ERNEAPSR 1925


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 343 FNPPTPPERFDSLFPEEKPTERVQNRDKNSN 373
           FNP     RF++LF   K      NR  N N
Sbjct: 183 FNPAKVKLRFENLFDGNKELGEQMNRFINEN 213


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 276 VTENTSRPSKSTIYEFDPLHKSSTSSKY 303
           VT   SRPSK    +FD L K   + +Y
Sbjct: 115 VTHVESRPSKKEGLQFDVLVKVDMTRQY 142


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 470 YTDPTNSILKEAYTLDNIY 488
           +T   N+ ++E YTL+N+Y
Sbjct: 577 FTRIANNTIQELYTLNNMY 595


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,914
Number of Sequences: 429
Number of extensions: 8139
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 10
length of query: 567
length of database: 140,377
effective HSP length: 61
effective length of query: 506
effective length of database: 114,208
effective search space: 57789248
effective search space used: 57789248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)