GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002140-TA|BGIBMGA002140-PA|IPR000873|AMP-dependent
synthetase and ligase
         (1071 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    31   0.042
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    27   0.68 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    26   1.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    26   1.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   8.4  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 0.042
 Identities = 10/43 (23%), Positives = 25/43 (58%)

Query: 461 WRAQSTSDHVIFTLLNAKGAVSKVLTCAELHKKAERIGNLLLE 503
           + A  T  +++F L N  G +  ++TC+ +H +++++  +  E
Sbjct: 252 FNANFTISYILFALFNTFGTILLIMTCSGVHSESQKLVGVCYE 294


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.68
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 753 RPRINLTNSFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSP 796
           R RI    +  ++ +AL  SPRA   +  CR N  + L G SSP
Sbjct: 222 RGRIVERFTSDRVHAALVTSPRARPLARTCRDNRLLVLAGTSSP 265


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 319 RDERICIVAEQRPDCGEEE 337
           R+ R+C+ A+Q P+C  EE
Sbjct: 132 REARVCMWADQVPECKNEE 150


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 319 RDERICIVAEQRPDCGEEE 337
           R+ R+C+ A+Q P+C  EE
Sbjct: 132 REARVCMWADQVPECKNEE 150


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 336 EESFQWMSRVLQAVDSIHQV 355
           E +F W S+V +A + IHQ+
Sbjct: 330 ELNFDWSSQVSKAGELIHQI 349


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,050
Number of Sequences: 317
Number of extensions: 8930
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 1071
length of database: 114,650
effective HSP length: 64
effective length of query: 1007
effective length of database: 94,362
effective search space: 95022534
effective search space used: 95022534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)