Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002140-TA|BGIBMGA002140-PA|IPR000873|AMP-dependent
synthetase and ligase
(1071 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 1070 0.0
AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical... 44 6e-04
U23521-8|AAC46810.4| 505|Caenorhabditis elegans Hypothetical pr... 37 0.067
Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.12
U58758-13|AAB93427.1| 565|Caenorhabditis elegans Hypothetical p... 36 0.15
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 34 0.47
Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical pr... 33 0.82
Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical pr... 33 1.1
AC006674-4|AAF39940.1| 402|Caenorhabditis elegans Hypothetical ... 33 1.1
AF016686-12|AAB66234.1| 723|Caenorhabditis elegans Hypothetical... 32 1.9
AC199169-9|ABO33255.1| 435|Caenorhabditis elegans Hypothetical ... 32 1.9
AC024845-5|AAF60848.1| 719|Caenorhabditis elegans Hypothetical ... 32 2.5
U41028-1|AAA82354.1| 532|Caenorhabditis elegans Hypothetical pr... 31 3.3
AF098989-3|AAK18953.2| 569|Caenorhabditis elegans Hypothetical ... 31 4.4
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 1070 bits (2649), Expect = 0.0
Identities = 521/929 (56%), Positives = 665/929 (71%), Gaps = 28/929 (3%)
Query: 1 MLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHAVLASVLNGMHVIFIPYALMKVSPAS 60
+ AHCR L+ A Y E E MVCV+DFKRE GLWHA+LAS+ NGM VIF+PY+LMK++PA+
Sbjct: 487 VFAHCRALTTAMEYKEDETMVCVVDFKREVGLWHAILASIFNGMKVIFVPYSLMKMNPAT 546
Query: 61 WMHMITKHRASIAIVKSRDLHWGLLATRDHKEISLSSLRMLLVADGANPWSLSSCDQFLS 120
WMHM++K++A+ A+VKSRDLHW LLATRDHK+ISL+SLR LLVADGANPWSLSSCD F +
Sbjct: 547 WMHMVSKYQATTALVKSRDLHWALLATRDHKDISLASLRTLLVADGANPWSLSSCDAFAA 606
Query: 121 VFQSK--GVRGDAICPCACSSESMTVCIXXXXXXXXXXXXX--VLSMSGLSYGVVRVDAE 176
F +R DA+CPCA SSE+ T+ I +LSMS LS+ VVRVD E
Sbjct: 607 AFTPSPYSLRPDAMCPCAGSSETGTISIRRRGNAQLGSQSGRGILSMSALSHCVVRVDTE 666
Query: 177 NSLTSLTLQDCGQVMPSCVIVVVKMEGPAYLCKTDEVGEICVLSGATGSGYWGLPGLTNT 236
NSLTSLTLQD GQ++ V+VV ++G LC+ DE+GEICV + +T YW L G T+
Sbjct: 667 NSLTSLTLQDAGQIVAGAVVVVTAIDGSNRLCQADEIGEICVSANSTAQLYWALDGQTHH 726
Query: 237 VFRVRPLDSDGEPIGEEHYVRSXXXXXXXXXXXXXXXXSRDGLMTVTGRKHNMDDIIATV 296
F+V P+ G+ IG YVRS R L+ V+GR H+ DDIIATV
Sbjct: 727 TFKVEPVGEYGKLIGAVRYVRSGLIGFMGPDGMVFVVARRQSLLAVSGRYHSADDIIATV 786
Query: 297 LAVEPMKFIYRGRIAVFSVRVLRDERICIVAEQRPDCGEEESFQWMSRVLQAVDSIHQVG 356
LAVEPMKF+YRGRI VFS VLRDERI IVAEQ+P+C EEE+F W++RVL+A+D+IHQVG
Sbjct: 787 LAVEPMKFVYRGRICVFSTSVLRDERIVIVAEQKPNCSEEEAFDWITRVLRAIDTIHQVG 846
Query: 357 IYCLALVQPNFLPKTPLGGIHLSECKRRFLEGTLHPSNVLMCPHTCVTNLPKPREIHSDV 416
IYC ALV N LPKTPLGG+H+SE K+RF G LHPS +LMCPH CV NLPKPRE +DV
Sbjct: 847 IYCCALVPANHLPKTPLGGVHVSETKQRFENGDLHPSTLLMCPHNCVLNLPKPRERQADV 906
Query: 417 GPASVIVGNLVQGNRLASAQGRDMGYTDDSDAARKYQFISQILRWRAQSTSDHVIFTLLN 476
GPA++ VGN+VQG R+A A+GR++ DD + + + LR RAQS+ DH I TL+
Sbjct: 907 GPAAMFVGNIVQGVRIAVAKGRNI---DDEPSLP----LLECLRSRAQSSPDHRILTLVT 959
Query: 477 AKGAVSKVLTCAELHKKAERIGNLLLEKGRVNTGDHVALIFPPGLDLICAFYGCLYVGAV 536
+K A TC+ L K+AERI LL ++ R++ GDHVALIFPP +DL+ AF+GCL G V
Sbjct: 960 SKNAEQDTATCSTLLKRAERIAGLLTDRARLSRGDHVALIFPPSIDLVAAFFGCLSAGLV 1019
Query: 537 PVTIRPPHPQNLHTTLPTVRMIVDVSKATLVLSNQSVIKLLRSKEASNVLDSKAWPMTLD 596
PV I+PP +L+TTL +RM+VD+SKA +L+ Q+V KLL+SKEA++ +DS AWPM LD
Sbjct: 1020 PVCIKPPVASDLNTTLGPIRMMVDMSKAVAILAPQNVSKLLKSKEAAHSIDSNAWPMILD 1079
Query: 597 TDDMP---KKK--------LPIMYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCR 645
+D P ++K A + E + YLDFS++++G L G MS A+ ++C+
Sbjct: 1080 LEDAPSSWRRKNNNNCDTTTSGSSGAASKEEICYLDFSINSSGQLQGSSMSEASAITVCK 1139
Query: 646 SMKIACELYPSRHIALCLDPYCGLGFALWCLSSIYSGHHSILIPPSEVEVNPALWLSAVS 705
S+K++ ELYPSRH+ +C PY G+ LWCLSS+YSGHH+ LIPP EVE P+L+L+ +S
Sbjct: 1140 SIKVSSELYPSRHVVVCAPPYSGISLVLWCLSSVYSGHHTTLIPPMEVEQQPSLFLTTLS 1199
Query: 706 QYKVRDTFCSYGVMELCTKGLGSSVNQLKSKGINLACVRTCVVVAEERPRINLTNSFSKL 765
KVRD F +Y + C L +SV L+ +G NL+ +R+CV +AEERPRI L +SF KL
Sbjct: 1200 NLKVRDAFTTYSTINTCVTQLATSVENLRERGCNLSMLRSCVAIAEERPRIALMSSFCKL 1259
Query: 766 FSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSTVYVDLRALRNDRVSLVERGSPHSLC 825
F+ L L+ RA+STSF RVN AIC+QGAS PEPSTVYVD RALRNDR+SLV +G+PHS+
Sbjct: 1260 FAPLALNNRAISTSFSSRVNAAICMQGASGPEPSTVYVDARALRNDRISLVGKGAPHSVA 1319
Query: 826 LMESGKLLPGVKVITANPETKGQCGDSHLGEIWVQSPHNAS-----GYFTIYGDESDY-A 879
L+ESGKLLPGVK+ ANPET+GQC DSHLGEIWV S HNAS T +GDE
Sbjct: 1320 LIESGKLLPGVKIAIANPETRGQCADSHLGEIWVASIHNASPLNRLASVTGFGDEGTMNT 1379
Query: 880 DHFSAQLVTGNTGEVYARTGYLGFLRRTE 908
D ++A+L TG+T +ARTGYLGFLR+T+
Sbjct: 1380 DVYNARLTTGDTKTRWARTGYLGFLRQTQ 1408
Score = 99.1 bits (236), Expect = 1e-20
Identities = 46/125 (36%), Positives = 70/125 (56%)
Query: 947 DTHDAVFVVGALDETIMLRGMRYHPIDIENSVMRCHKKIAECAVFTWTNLLVVVVELDGN 1006
+ HDAVFVVGAL+E+++LRGMRYHP D+E++V + H+ + AVFTW +L+V+ E G+
Sbjct: 1415 ELHDAVFVVGALNESLVLRGMRYHPFDVESTVSKAHRFVGNSAVFTWNHLVVIAAECTGS 1474
Query: 1007 DSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRGEKQRMHLRDGFLSDQIDAIY 1066
+S+A GEK R +R FL ++++ IY
Sbjct: 1475 ESDALDLVPAITSAVLEEHHLIVGVVVVVDPGSIRHGPGGEKLRSTIRSLFLEEKLNPIY 1534
Query: 1067 IAYNM 1071
+AY+M
Sbjct: 1535 VAYHM 1539
Score = 96.7 bits (230), Expect = 8e-20
Identities = 121/489 (24%), Positives = 210/489 (42%), Gaps = 62/489 (12%)
Query: 465 STSDHVIFTLLNAKGAVSKVLTCAELHKKAERIGNLLLEK-------GRVNT----GDHV 513
+ + ++ +L+ S LT +LH +A ++ +LL K G N GD V
Sbjct: 279 TAAKNIAAMVLDQSAKPSTQLTYGKLHSRAGKVAYMLLTKTVQVNKDGSKNVMCKPGDRV 338
Query: 514 ALIFP--PGLDLICAFYGCLYVGAVPVTIRPPHPQNLHTTLPTVRMIVDVSKATLVLSNQ 571
ALI+P L + AFYGCL G +PV + P + + + ++ + L+++
Sbjct: 339 ALIYPNTQPLHFLAAFYGCLQAGVIPVPVEMPSSKR-EAGIAQLGFLLGNCGVKVALTSE 397
Query: 572 SVIKLLRSK------------------EASNVLDSKAWPMT--LDTDDMPKKKLPIMYRA 611
S K L K +S ++D + WP T+ M K + A
Sbjct: 398 SCYKGLPKKVNTSSTFSAPSGSNSLTGTSSEIVDFRGWPRLWWAVTEHMSKPSRD--WTA 455
Query: 612 PTA---EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKIACELYPSRHIALCLDPYCG 668
P E +AY++++ G + G ++ AV + CR++ A E + +D
Sbjct: 456 PPRLADETIAYIEYTTGNDGTVKGCCVTRQAVFAHCRALTTAMEYKEDETMVCVVDFKRE 515
Query: 669 LGFALWCLSSIYSGHHSILIPPSEVEVNPALWLSAVSQYKVRDTFCSYGVMELCTKGLGS 728
+G L+SI++G I +P S +++NPA W+ VS+Y+ T +L L +
Sbjct: 516 VGLWHAILASIFNGMKVIFVPYSLMKMNPATWMHMVSKYQA--TTALVKSRDLHWALLAT 573
Query: 729 SVNQLKSKGINLACVRTCVVVAEERP-RINLTNSFSKLF--SALGLSPRAVSTSFGCRV- 784
K I+LA +RT +V P ++ ++F+ F S L P A+ G
Sbjct: 574 R----DHKDISLASLRTLLVADGANPWSLSSCDAFAAAFTPSPYSLRPDAMCPCAGSSET 629
Query: 785 -NIAICLQGAS--SPEPSTVYVDLRALRNDRVSLVERGSPHSLCLMESGKLLPG-VKVIT 840
I+I +G + + + + AL + V + S SL L ++G+++ G V V+T
Sbjct: 630 GTISIRRRGNAQLGSQSGRGILSMSALSHCVVRVDTENSLTSLTLQDAGQIVAGAVVVVT 689
Query: 841 ANPETKGQCGDSHLGEIWVQSPHNASGYFTIYGDESDYADHFSAQLVTGNTGEV-----Y 895
A + C +GEI V + A Y+ + G H G G++ Y
Sbjct: 690 AIDGSNRLCQADEIGEICVSANSTAQLYWALDGQ----THHTFKVEPVGEYGKLIGAVRY 745
Query: 896 ARTGYLGFL 904
R+G +GF+
Sbjct: 746 VRSGLIGFM 754
>AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical
protein C50H11.1 protein.
Length = 517
Score = 44.0 bits (99), Expect = 6e-04
Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 24/245 (9%)
Query: 462 RAQSTSDHVIFTLLNAKGAVSKVL--------TCAELHKKAERIGNLLLEKGRVNTGDHV 513
RA +++ + I + N + +SKVL T + ++A + L EK ++ GD V
Sbjct: 17 RAATSAANNIISQANLQSDISKVLFIDDGRKITYGDFVQRAGQYATALTEKYKIKKGDRV 76
Query: 514 ALIFPPGLDLICAFYGCLYVGAVPVTIRPPHPQN-----LHTTLPTVRMIVDVSKATLVL 568
D + CL +GA+ V + P Q+ + P++ I A +
Sbjct: 77 MARVSKTTDTAALYAACLQIGALYVPVNPALTQSEAAHYVKDAKPSL-WITCKDDADQIA 135
Query: 569 SNQSVIKLLRSKEASNVLDSKAWPMTLDTDDMPKKKLPIMYRAPTAEMLAYLDFSVSTTG 628
Q V+K + V++ K D+ K+K M A + F+ TTG
Sbjct: 136 MFQRVLKTVCIDNPVEVINEKVL-----ADEAGKRKACTMIEHVEKSNAATICFTSGTTG 190
Query: 629 MLAGIKMSHAAVTSLCRSMKIACELYPSRHIALCLDPY--CGLGFALWCLSSIYSGHHSI 686
G +SH A+T+ ++ + CL + GL F+L C S++S H S+
Sbjct: 191 APKGAVLSHGALTNNTNALVQEWGFTENDVNLHCLPIFHAHGLYFSLHC--SLFS-HSSV 247
Query: 687 LIPPS 691
+ P+
Sbjct: 248 IWRPN 252
>U23521-8|AAC46810.4| 505|Caenorhabditis elegans Hypothetical
protein F41C3.3 protein.
Length = 505
Score = 37.1 bits (82), Expect = 0.067
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 486 TCAELHKKAERIGNLLLEKGRVNTGDHVALIFPPGLDLICAFYGCLYVGAVPVTIRPPHP 545
T E K+ + L EK + GD V D + CL +GA+ + + P
Sbjct: 48 TYGEFVKRTGQYATALTEKYNIKKGDRVMARVSKTTDTAALYIACLQIGALYIPVNPG-- 105
Query: 546 QNLHTTLPTVRMIVDVSKATLVLSNQSVIKLLRSK 580
+T I D + + LV N+ + K+ R K
Sbjct: 106 ---YTESEAAHYIKDATPSILVSCNEELDKVFRDK 137
>Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical
protein AH10.1 protein.
Length = 566
Score = 36.3 bits (80), Expect = 0.12
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 945 SHDTHDAVFVVGALDETIMLRGMRYHPIDIENSVMRCHKKIAECAV 990
S D V V G + E I + GM+ P++IE+ V+ H K+ +CAV
Sbjct: 428 SVDQKGRVHVTGRIKELIKVNGMQVPPVEIED-VLLLHPKVKDCAV 472
>U58758-13|AAB93427.1| 565|Caenorhabditis elegans Hypothetical
protein ZK1127.2 protein.
Length = 565
Score = 35.9 bits (79), Expect = 0.15
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 945 SHDTHDAVFVVGALDETIMLRGMRYHPIDIENSVMRCHKKIAECAV 990
S D + V G + E I + GM+ P++IE+ V+ H K+ +CAV
Sbjct: 428 SIDDKGRIHVTGRIKELIKVNGMQVPPVEIED-VLLLHPKVKDCAV 472
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 34.3 bits (75), Expect = 0.47
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 520 GLDLICAFYGCLYVGAVPVTIRPPHPQNLHTTLPTVRMIVDVSKATLVLSNQSVIKLLRS 579
G+DL+ Y+G + ++ L ++ + +A +S+ + L +
Sbjct: 3841 GIDLLATTNVQEYIGHISKSVPSVDEPYLFGLPENIKYSWQIVEADRTISSIRTLALGDT 3900
Query: 580 KEASNVLDSKA------WPMTLDTDDMPKKKLPIMYRA--PTAEMLAYLDFSVSTTGMLA 631
K A + K W +DD+PK++LP R+ P +E+L + T L+
Sbjct: 3901 KNALSDQSDKISQIVSLWKKLCQSDDLPKRELPTAIRSADPISEVLC-----LETINALS 3955
Query: 632 GIKMSHAAVTSLCRSMK 648
IK H ++ + +SMK
Sbjct: 3956 LIKQLHRSIGHVAKSMK 3972
>Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical
protein C01G6.7 protein.
Length = 540
Score = 33.5 bits (73), Expect = 0.82
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 830 GKLLPGVKVITANPETKGQCGDSHLGEIWVQSPHNASGYF 869
G+L+PG + E CG +GE+W++ P GY+
Sbjct: 357 GRLVPGTSM-KVKKEDGTLCGPHEIGELWIKGPQMMKGYW 395
>Z70287-2|CAA94298.2| 700|Caenorhabditis elegans Hypothetical
protein R09E10.3 protein.
Length = 700
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 580 KEASNVLDSKAWPMTLDTDDMPKKKLPIMYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAA 639
KE + D + W + +M KK+ + PT E LA + F+ TTG G+ ++H
Sbjct: 227 KEMARENDFRLWSFN-EFVEMGKKQKHRPHVPPTPETLATISFTSGTTGRPKGVMLTH-- 283
Query: 640 VTSLCRSMKIACE 652
++C S ++CE
Sbjct: 284 -LNMC-SATMSCE 294
>AC006674-4|AAF39940.1| 402|Caenorhabditis elegans Hypothetical
protein K12H6.11 protein.
Length = 402
Score = 33.1 bits (72), Expect = 1.1
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 560 DVSKATLVLSNQSVIKLLRSKEASNVLDSKAWPMTLDTDDMPKKKLPIMYRAPTAEMLAY 619
++S +L+ S++ + LRS +SN + +K P T + +P K P++ A
Sbjct: 20 NISPTSLIFSSKMSSRTLRSSSSSNAISTKTQPKTEEAPLIPVTKGPVIRMTSNMADKAQ 79
Query: 620 LDFSV--------STTGMLAGIKMSHAAVTSLCRSMKI 649
D S+ S G + G +++ + + ++ MKI
Sbjct: 80 NDHSMWPSTSKFESIWGNVLGERVNKSTIAAIREGMKI 117
>AF016686-12|AAB66234.1| 723|Caenorhabditis elegans Hypothetical
protein R07C3.4 protein.
Length = 723
Score = 32.3 bits (70), Expect = 1.9
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 599 DMPKKKLPIMYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKIACELYPSRH 658
++ KK + PT E LA + F+ TTG G ++H +LC S +ACE + H
Sbjct: 242 ELGKKHEHRPHAPPTPETLATISFTSGTTGRPKGAMLTH---LNLC-STTVACEEF--EH 295
Query: 659 IALCLDPY 666
+ LD Y
Sbjct: 296 VEGELDSY 303
>AC199169-9|ABO33255.1| 435|Caenorhabditis elegans Hypothetical
protein F38A1.4 protein.
Length = 435
Score = 32.3 bits (70), Expect = 1.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 665 PYCGLGFALWCLSSIYSGHHSILIPPSEVEVNPALWLSAVSQ 706
P L + ++C + + SG + I +PP V W++ V Q
Sbjct: 362 PMSSLSYVIYCANPVVSGQNIIELPPMTVPFEDVYWITLVVQ 403
>AC024845-5|AAF60848.1| 719|Caenorhabditis elegans Hypothetical
protein Y65B4BL.5 protein.
Length = 719
Score = 31.9 bits (69), Expect = 2.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 188 GQVMPSCVIVVVKMEGPAYLCKTDEVGEICVLSGATGSGYW 228
G V+PSC I +V + Y K D+ GE+CV GY+
Sbjct: 503 GMVIPSCQIKLVDVPELNYYAK-DQAGEVCVKGHIIFKGYY 542
>U41028-1|AAA82354.1| 532|Caenorhabditis elegans Hypothetical
protein C25G6.3 protein.
Length = 532
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 483 KVLTCAELHKKAERIGNLLLEKGRVNTGDHVALIFPPGLDLICAFYGCLYVGAVPVTIRP 542
+ +T EL ++R N + G V GD + + ++ + G +GA+PV I P
Sbjct: 113 RCVTYEELVDGSKRTANYMSHHG-VKNGDRILMCMENTVEYVLYQLGGFLLGAIPVLINP 171
Query: 543 PH 544
H
Sbjct: 172 SH 173
>AF098989-3|AAK18953.2| 569|Caenorhabditis elegans Hypothetical
protein F47G6.2 protein.
Length = 569
Score = 31.1 bits (67), Expect = 4.4
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 613 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKIACELYPSRHIALCLDPYCGLG-F 671
++ LA L F++ TTG I +SH + + R++ A + +H+ C P + F
Sbjct: 216 SSHKLACLQFTLGTTGAPKLIALSHYQMLNGARAVAAAFGI-NDKHVLACALPIFRIAIF 274
Query: 672 ALWCLSSIYSGHHSILIPPSEVEVNPALWLSAVSQYKVRDTFCSYGVMELCTK 724
L CLS + I+ P + P S+VS+Y+ + + L K
Sbjct: 275 NLICLSPFLT-ECRIIFP--DATPLPKNLFSSVSKYRCTTLLSNGAALRLLLK 324
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,362,688
Number of Sequences: 27539
Number of extensions: 969759
Number of successful extensions: 1838
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1811
Number of HSP's gapped (non-prelim): 28
length of query: 1071
length of database: 12,573,161
effective HSP length: 89
effective length of query: 982
effective length of database: 10,122,190
effective search space: 9939990580
effective search space used: 9939990580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
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