GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002140-TA|BGIBMGA002140-PA|IPR000873|AMP-dependent
synthetase and ligase
         (1071 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   7.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 189 QVMPSCVIVVVKMEGPAYLCKTD 211
           Q + +CV   V +E P +LCK D
Sbjct: 215 QTIGTCVANAVVIEQPTFLCKGD 237


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 470 VIFTLLNAKGAVSKVLTCAELHKKAERIGNLLLEKGRVNTGDHVALIFPPGLDLICAFYG 529
           ++F  +   G    +     +H    R  NLL+    V+    +A  +P  L ++C  Y 
Sbjct: 775 LVFVQILINGVWMIIDPAKAMHHYPTREDNLLVCNSYVDASYMIAFAYPIMLIVVCTVYA 834

Query: 530 CL 531
            L
Sbjct: 835 VL 836


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,612
Number of Sequences: 429
Number of extensions: 9960
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 1071
length of database: 140,377
effective HSP length: 65
effective length of query: 1006
effective length of database: 112,492
effective search space: 113166952
effective search space used: 113166952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)