GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002139-TA|BGIBMGA002139-PA|undefined
         (239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   2.4  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   5.6  

>SPAC31G5.10 |eta2||Myb family transcriptional regulator
          Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 56 LKRPKRRPLPEFYEDDDIELELXXXXXXXXXXXXEGGTMTP 96
          +K  KR+ + EF ED++ E E+             GGT  P
Sbjct: 58 MKSMKRKDVYEFDEDNEFEFEMGSLIHKPSRAHSLGGTSEP 98


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 23  VADRVQCY-AQAEDTGTGTGRWKVSAKIQQLLNTL--KRPKRRPLPE 66
           +A  + CY A+++D   G G W  S     LLN      PK   LP+
Sbjct: 116 IAYLIACYVAESDDVYVGIGGWVYSLLAMYLLNLFGDLHPKLLNLPQ 162


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,604
Number of Sequences: 5004
Number of extensions: 31557
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 2
length of query: 239
length of database: 2,362,478
effective HSP length: 71
effective length of query: 168
effective length of database: 2,007,194
effective search space: 337208592
effective search space used: 337208592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)