GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002139-TA|BGIBMGA002139-PA|undefined
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0605 - 4983235-4983849,4985658-4986578                           30   1.9  
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888...    28   5.8  
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941...    28   5.8  
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795...    28   5.8  
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192...    28   5.8  
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833...    28   5.8  
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550...    28   7.7  

>12_01_0605 - 4983235-4983849,4985658-4986578
          Length = 511

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 43/175 (24%), Positives = 58/175 (33%), Gaps = 15/175 (8%)

Query: 51  QLLNTLKRPKR---RPLPEFYEDDDIELELXXXXXXXXXXXXEGGTMTPAVGEQLVVPAG 107
           QLL+  +RP     RPLP      D+  EL             G  +T  +G  L V A 
Sbjct: 22  QLLSDARRPLPPGPRPLPVIGNLLDVAGELPHRSLSRVAQRY-GPLVTLRLGTTLAVVAS 80

Query: 108 LPRNLEAALQRYGTASFKANMATVLDPNGKLSNSLTYGLPKTSSGDVVSFRGWPSLHWVS 167
            P      L R+G +            +G  +NS+ + LP            W +L  + 
Sbjct: 81  SPATAREVLHRHGASITDRGTPDAWRTDGHETNSI-FALP-------TRHHRWRALRRLG 132

Query: 168 TEKLXXXXXXXXXXXXXADECPAHIEHTS---AADGSAMGVIVTSETLTVFAAHA 219
            E+L              D     + H S   AA G   G  V       FAA A
Sbjct: 133 AEQLFSPRRVEKQRPLRRDAVRGLLRHVSELAAASGGGTGTAVVDVGRAAFAAMA 187


>08_02_1620 -
           28288152-28288353,28288469-28288557,28288634-28288828,
           28289082-28289423,28290227-28291672,28292590-28292666,
           28293160-28294509,28295921-28296029,28296896-28297007,
           28297800-28297957
          Length = 1359

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 27  VQCYAQAEDTGTGTGRWKVSAKIQQLLNTLKRPKRRPLPEFYEDDDIELE 76
           V   AQ   TGTGTG W+  A   Q++  LK      L + Y    ++L+
Sbjct: 579 VDSTAQTGHTGTGTGDWQEEA--YQMVKNLKDQYFPELNDLYNKISLKLQ 626


>05_03_0187 +
           9413575-9414895,9415014-9415289,9415513-9415631,
           9415749-9416192
          Length = 719

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 5   VQPDVTNATAASRR-GGALVADRVQCYAQAEDTGTGTGRW-KVSAKIQQLLNTLKRPKRR 62
           V+P  T  +++SR   G    D+       E++ + T R  K+S K+Q  L T KR +RR
Sbjct: 140 VKPKETTGSSSSRSVAGGHTIDKYYKPPSIEESASMTQRVIKLSNKVQTALTTQKREERR 199


>05_03_0065 -
           7953414-7953845,7953963-7954081,7954158-7955990,
           7957103-7957559
          Length = 946

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 5   VQPDVTNATAASRR-GGALVADRVQCYAQAEDTGTGTGRW-KVSAKIQQLLNTLKRPKRR 62
           V+P  T  +++SR   G    D+       E++ + T R  K+S K+Q  L T KR +RR
Sbjct: 283 VKPKETTGSSSSRSVAGGHTIDKYYKPPSIEESASMTQRVIKLSNKVQTALTTQKREERR 342


>01_06_0544 +
           30118208-30118417,30118959-30119063,30119179-30119260,
           30119415-30121250,30121327-30121445,30121563-30122006
          Length = 931

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 5   VQPDVTNATAASRR-GGALVADRVQCYAQAEDTGTGTGRW-KVSAKIQQLLNTLKRPKRR 62
           V+P  T  +++SR   G    D+       E++ + T R  K+S K+Q  L T KR +RR
Sbjct: 263 VKPKETTGSSSSRSVAGGHTIDKYYKPPSIEESASMTQRVIKLSNKVQTALTTQKREERR 322


>01_04_0076 +
           15780981-15780996,15781277-15783109,15783186-15783304,
           15783422-15783724
          Length = 756

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 5   VQPDVTNATAASRR-GGALVADRVQCYAQAEDTGTGTGRW-KVSAKIQQLLNTLKRPKRR 62
           V+P  T  +++SR   G    D+       E++ + T R  K+S K+Q  L T KR +RR
Sbjct: 136 VKPKETTGSSSSRSVAGGHTIDKYYKPPSIEESASMTQRVIKLSNKVQTTLTTQKREERR 195


>12_02_0642 +
           21454142-21454251,21454683-21454872,21454988-21455069,
           21455224-21455802,21455854-21456909,21457133-21457251,
           21457369-21457812
          Length = 859

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 5   VQPDVTNATAASRR-GGALVADRVQCYAQAEDTGTGTGRW-KVSAKIQQLLNTLKRPKRR 62
           V+P  T  +++SR   G    D+       E++ + T R  K+S K+Q  L T KR +RR
Sbjct: 258 VKPKETTGSSSSRSVAGGHTIDKYYKPPSIEESASMTQRVIKLSNKVQTALTTHKREERR 317


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,484,927
Number of Sequences: 37544
Number of extensions: 249773
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 8
length of query: 239
length of database: 14,793,348
effective HSP length: 80
effective length of query: 159
effective length of database: 11,789,828
effective search space: 1874582652
effective search space used: 1874582652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)