GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002139-TA|BGIBMGA002139-PA|undefined
         (239 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)               98   7e-21
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 59/139 (42%), Positives = 80/139 (57%), Gaps = 5/139 (3%)

Query: 7   PDVTNATAASRRGGALVADRVQCYAQAEDTGTGTGRWKVSAKIQQLLNTLKRPKRRPLPE 66
           PDVT   A+  +    VA  V       +   GT R  VS+KIQQLLNTLKRPK++PL +
Sbjct: 720 PDVTRK-ASDTKPPTRVA-HVSSIRLENNESPGTSR--VSSKIQQLLNTLKRPKKKPLEQ 775

Query: 67  FYEDDDIELELXXXXXXXXXXXXEGGTMTPAVGEQLVVPAGLPRNLEAALQRYGTASFKA 126
           FY++DD ++ +            EG  + P +GEQL+V   +PR LE A+ R+G+ S K 
Sbjct: 776 FYQEDDADI-IQATKPDPNAPKPEGQVLKPVLGEQLLVTEEIPRCLEEAVMRFGSKSSKQ 834

Query: 127 NMATVLDPNGKLSNSLTYG 145
              TV+D +GK S  LTYG
Sbjct: 835 PCCTVVDSHGKASVVLTYG 853


>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 93   TMTPAVGEQLVVPAGLPRNLEAALQRYGTASFKANMATVLDPNGKLSNSLTYGLPKTSS 151
            ++  ++ E+LV  A  P    A+ Q  G+++  +      + +G+LS+S   GLP  S+
Sbjct: 998  SLDSSLSERLVECAPTPSESGASSQALGSSAAPSLTEVATNSSGQLSSSFPKGLPDLSA 1056


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,924,547
Number of Sequences: 59808
Number of extensions: 239213
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 16,821,457
effective HSP length: 80
effective length of query: 159
effective length of database: 12,036,817
effective search space: 1913853903
effective search space used: 1913853903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)