GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002139-TA|BGIBMGA002139-PA|undefined
         (239 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    70   2e-12
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
           protein F28B3.1 protein.
          Length = 1539

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 42  RWKVSAKIQQLLNTLK--RPKRRPLPEFYEDDDIELELXXXXXXXXXXXXEGGTMTPAVG 99
           +WK++  IQ +    +  RP+ +PL ++Y DDD ELE             EG  M P  G
Sbjct: 195 KWKLNQTIQAIEENRQKLRPRSKPLQDYYNDDDAELEAMAKIRDPDAPRPEGTIMNPVRG 254

Query: 100 EQLVVPAG--LPRNLEAALQRYGTASFKANMATVLDPNGKLSNSLTYGLPKTSSGDV 154
           E         +PR+L++A  R+GT + K   A VLD + K S  LTYG   + +G V
Sbjct: 255 EAAHSNTNNTMPRSLDSAFHRFGTTAAKNIAAMVLDQSAKPSTQLTYGKLHSRAGKV 311



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 129 ATVLDPNGKLSNSLTYGLPKTSSGDVVSFRGWPSLHWVSTEKLXXXXXXXXXXXXXADEC 188
           +T   P+G  SNSLT      +S ++V FRGWP L W  TE +             ADE 
Sbjct: 411 STFSAPSG--SNSLT-----GTSSEIVDFRGWPRLWWAVTEHMSKPSRDWTAPPRLADET 463

Query: 189 PAHIEHTSAADGSAMGVIVTSETL 212
            A+IE+T+  DG+  G  VT + +
Sbjct: 464 IAYIEYTTGNDGTVKGCCVTRQAV 487


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 22  LVADRVQCYAQAEDTGTGTGRWKVSAKIQQLLNTLKRPKRRPLPEFYEDDDIELELXXXX 81
           L A R    A     G  T RW    + +     L RP++    ++++D+D+E ++    
Sbjct: 296 LSAQRADLLADDGFHGKSTSRWAHPVRFKS--QHLGRPQQADDDDYFDDEDLENDMSGPR 353

Query: 82  XXXXXXXXEGGTMTPAVGEQLVVPAGLPRNLEAALQRYGTASFKANMATVLDPN 135
                     G+    V  + +   G    ++AA      +  + NM +   P+
Sbjct: 354 RKIHAADSPAGSRRRRVPPRAMNFLGRNSGMQAATDEMELSGQEENMGSNYIPD 407


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 120  GTASFKANMATVLDPNGKLSNSLTYGLPKTSSGDVVS 156
            G       +ATVLDPN     ++T  +PK SS    S
Sbjct: 1020 GKKGVGTKLATVLDPNSTEPPTITAVMPKDSSAATAS 1056


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 120  GTASFKANMATVLDPNGKLSNSLTYGLPKTSSGDVVS 156
            G       +ATVLDPN     ++T  +PK SS    S
Sbjct: 1020 GKKGVGTKLATVLDPNSTEPPTITAVMPKDSSAATAS 1056


>Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical
           protein R53.7b protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 188 CPAHIEHTSAAD-GSAMGVIVTSETLTVFAAHAVEALKRLKITDFETFFIGDP 239
           C + I  +SA   G  +  ++  +T + FA H  +A+  + +TDF +  +  P
Sbjct: 401 CKSQILISSADSVGQVLDTLLAGDTQSAFAIHNGKAIGVISLTDFLSHILRSP 453


>Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical
           protein R53.7a protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 188 CPAHIEHTSAAD-GSAMGVIVTSETLTVFAAHAVEALKRLKITDFETFFIGDP 239
           C + I  +SA   G  +  ++  +T + FA H  +A+  + +TDF +  +  P
Sbjct: 373 CKSQILISSADSVGQVLDTLLAGDTQSAFAIHNGKAIGVISLTDFLSHILRSP 425


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,043,019
Number of Sequences: 27539
Number of extensions: 182369
Number of successful extensions: 367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 7
length of query: 239
length of database: 12,573,161
effective HSP length: 79
effective length of query: 160
effective length of database: 10,397,580
effective search space: 1663612800
effective search space used: 1663612800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)