GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002139-TA|BGIBMGA002139-PA|undefined
         (239 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44090.1 68418.m05394 calcium-binding EF hand family protein,...    29   2.8  
At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase, pu...    28   4.9  
At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052...    27   8.5  

>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
           putative / protein phosphatase 2A 62 kDa B'' regulatory
           subunit, putative contains Pfam profile: PF00036 EF
           hand; identical to cDNA protein phosphatase 2A 62 kDa
           B'' regulatory subunit GI:5533378
          Length = 538

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 42  RWKVSAKIQQLLNTLKRPKRRPLPEFY 68
           R K S  +Q  L +++ PKR+ +P+FY
Sbjct: 106 RQKTSPSLQSPLKSVREPKRQLIPQFY 132


>At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase,
           putative / FK506-binding protein, putative / pasticcino
           1-D (PAS1-D) nearly identical to pasticcino 1-D
           [Arabidopsis thaliana] GI:3080740
          Length = 635

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 91  GGTMTPAVGEQLVVPAGLPRNLEAALQRYGTASFKANMATVLDP--NGKLSNSLTYGLPK 148
           GG  +P  G+Q++    + R L+  +     +        + D   N K+   L  G+P 
Sbjct: 43  GGDSSPVDGDQVIYHCTV-RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPT 101

Query: 149 TSSGDVVSFRGWPSLHWVSTE 169
              G++  F+  P +H+   +
Sbjct: 102 MHKGEIAMFKMKPEMHYAEID 122


>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
           SDA1 domain; similar to mystery 45A
           (GI:16797816){Drosophila melanogaster}
          Length = 804

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 16  SRRGGALVADRVQCYAQAEDTGTGTGRWKVSAKIQQLLNTLKRPKR 61
           S++   +V +R   Y +A + GT + + K  AK+Q+ + ++KR +R
Sbjct: 267 SKKIDQVVINRQAVY-KANNKGTSSSKKKKQAKLQRAVKSIKRKQR 311


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,869,043
Number of Sequences: 28952
Number of extensions: 175763
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 12,070,560
effective HSP length: 79
effective length of query: 160
effective length of database: 9,783,352
effective search space: 1565336320
effective search space used: 1565336320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)