Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002138-TA|BGIBMGA002138-PA|IPR000436|Sushi/SCR/CCP,
IPR006585|Fucolectin tachylectin-4 pentraxin-1, IPR001304|C-type
lectin, IPR003006|Immunoglobulin/major histocompatibility complex,
IPR008979|Galactose-binding like
         (1091 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    31   0.66 
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    31   1.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    30   2.0  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    29   3.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    28   6.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   8.2  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 227 YEFNVA-RGGSFD--EARKQCQSHGGDLIHGFQGATSSFLTQELERRKAQLKTQLVWIGA 283
           Y + +A RG  FD  E  +    H GDL   F       L +E+   KA LK+   W+  
Sbjct: 414 YRYRIAFRGKFFDKYEPPESLVPHAGDLGLWFYNVVDGILPEEIPIYKAWLKSYGEWMST 473

Query: 284 QKEPGLTSRTWQW 296
            K    T++T ++
Sbjct: 474 GKTDWGTTKTEEY 486


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 88  TTEHDRKRCTETQREASPWWQVDL 111
           T EHD KR   T RE S  W +DL
Sbjct: 23  TLEHDNKRLLLTYREESKTWDIDL 46


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 754  EKGYKVIGESLSTCE--DNGQWSGTTPTC 780
            EK  +V+G S+S     D G+W GT+P C
Sbjct: 1520 EKNIRVVGLSVSVANARDLGEWLGTSPQC 1548


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 468 FDWCPDPPAVSNASVTV-NGHKAGSLASYTCENGHILSGSTSVTCTL 513
           F W    P V N+ VTV NGH    + +Y  ++  +LSGS     TL
Sbjct: 412 FPWMS--PIVGNSMVTVANGHNWMCILNYLTDSYPLLSGSAVAAFTL 456


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 641  CEYIDCGKLPTLPYGTMELLNGTTHLGSVI-QYSCTTNYRLVG 682
            C+Y  CGK   L +GT  ++N TT +G+ + + S +  Y  +G
Sbjct: 1209 CDYFQCGKGRDLGFGT--IINFTTKIGTGMGEQSLSREYFYLG 1249


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 641  CEYIDCGKLPTLPYGTMELLNGTTHLGS 668
            CEY  CGK   L +G+  +LN TT +G+
Sbjct: 1275 CEYYQCGKGRDLGFGS--ILNFTTKIGT 1300


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,444,879
Number of Sequences: 5004
Number of extensions: 242600
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 9
length of query: 1091
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1011
effective length of database: 1,962,158
effective search space: 1983741738
effective search space used: 1983741738
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)