Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002138-TA|BGIBMGA002138-PA|IPR000436|Sushi/SCR/CCP,
IPR006585|Fucolectin tachylectin-4 pentraxin-1, IPR001304|C-type
lectin, IPR003006|Immunoglobulin/major histocompatibility complex,
IPR008979|Galactose-binding like
         (1091 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0164 + 11364436-11367280,11367357-11367715                       33   1.3  
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018     32   2.9  
09_02_0548 - 10467342-10468810,10470309-10471632                       30   8.8  
08_01_0814 + 7905561-7906041,7906334-7906434,7907792-7907888,790...    30   8.8  

>10_06_0164 + 11364436-11367280,11367357-11367715
          Length = 1067

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 333 NDVGCNLDYLHWICQYLPPTCG-SPDK-LLNTTILGNDYDVGSRIVYKCPEGHMLLGDKS 390
           +D+   LDYLH  C      C   P   LL   ++ +  D+G   +   PEG  L+  KS
Sbjct: 876 SDIAAALDYLHNSCHPTIVHCDFKPSNILLGEDMVAHVGDLGLAKILTDPEGEQLINSKS 935

Query: 391 RHCKKDGFWSGAPPSCKYVNCGGLTPIEDGDV 422
                      AP   +Y  CG ++P   GDV
Sbjct: 936 SVGLMGTIGYIAP---EYAECGQISP--SGDV 962


>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
          Length = 1040

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 334 DVGCNLDYLHWICQYLPPTCG-SPDK-LLNTTILGNDYDVGSRIVYKCPEGHMLLGDKS 390
           D+G  LDYLH  CQ     C   P   LL   ++ +  D G   +   PEG  L+  KS
Sbjct: 855 DIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKS 913


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 56 PFCGTNVAFRKPANQSTTVRGGAAANGND-GEKTTEHD 92
          P C TN + + PA    T +G   A+GN     TT HD
Sbjct: 7  PCCSTNNSSKAPATARPTTKGSTTASGNGRPPPTTLHD 44


>08_01_0814 +
           7905561-7906041,7906334-7906434,7907792-7907888,
           7908432-7908493,7909500-7909589
          Length = 276

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 165 TKTFTCARPLIGQHV-FLQLVGVEGSLSLCEVEVFTTEEFSNDRCAPAGAPADIELAAFS 223
           T T T ARP        L L G+   + + E+++   ++ S     PA +PA +E+    
Sbjct: 8   TLTLTLARPAAAAAAPLLPLRGLATKVEVIEIDLAEDDDSSASTSGPASSPASVEVVGVR 67

Query: 224 R 224
           R
Sbjct: 68  R 68


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,299,631
Number of Sequences: 37544
Number of extensions: 1835687
Number of successful extensions: 3237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3237
Number of HSP's gapped (non-prelim): 4
length of query: 1091
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1001
effective length of database: 11,414,388
effective search space: 11425802388
effective search space used: 11425802388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)